Hb_004116_130

Information

Type -
Description -
Location Contig4116: 138341-139917
Sequence    

Annotation

kegg
ID rcu:RCOM_0339660
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.30)
nr
ID XP_002533652.1
description Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
swissprot
ID Q9LMP1
description Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1
trembl
ID B9T5Y3
description Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis GN=RCOM_0339660 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_130 0.0 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
2 Hb_000693_020 0.2360823436 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
3 Hb_003687_030 0.2435231047 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_005000_250 0.2572442692 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Vitis vinifera]
5 Hb_006816_400 0.2599497846 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
6 Hb_000504_110 0.2641192894 - - F-box/LRR-repeat protein, putative [Ricinus communis]
7 Hb_004102_030 0.2722570705 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
8 Hb_029243_010 0.2753733362 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
9 Hb_000307_120 0.2800071858 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
10 Hb_003994_170 0.2837630934 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
11 Hb_000275_020 0.2857576052 - - PREDICTED: uncharacterized protein LOC105632656 [Jatropha curcas]
12 Hb_002341_020 0.2859439192 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
13 Hb_006210_030 0.2863420926 - - -
14 Hb_001675_030 0.2888862859 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000162_220 0.2920269596 - - nodulin family protein [Populus trichocarpa]
16 Hb_000454_060 0.2922260209 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
17 Hb_002094_070 0.2933940946 - - Organic cation transporter, putative [Ricinus communis]
18 Hb_062785_010 0.2998807206 - - Organic cation transporter, putative [Ricinus communis]
19 Hb_002157_090 0.3004772307 - - hypothetical protein VITISV_041741 [Vitis vinifera]
20 Hb_000627_090 0.3035735069 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004116_130 Hb_004116_130 Hb_000693_020 Hb_000693_020 Hb_004116_130--Hb_000693_020 Hb_003687_030 Hb_003687_030 Hb_004116_130--Hb_003687_030 Hb_005000_250 Hb_005000_250 Hb_004116_130--Hb_005000_250 Hb_006816_400 Hb_006816_400 Hb_004116_130--Hb_006816_400 Hb_000504_110 Hb_000504_110 Hb_004116_130--Hb_000504_110 Hb_004102_030 Hb_004102_030 Hb_004116_130--Hb_004102_030 Hb_002282_040 Hb_002282_040 Hb_000693_020--Hb_002282_040 Hb_000693_020--Hb_006816_400 Hb_000454_060 Hb_000454_060 Hb_000693_020--Hb_000454_060 Hb_128051_010 Hb_128051_010 Hb_000693_020--Hb_128051_010 Hb_013399_010 Hb_013399_010 Hb_000693_020--Hb_013399_010 Hb_001675_030 Hb_001675_030 Hb_003687_030--Hb_001675_030 Hb_000886_030 Hb_000886_030 Hb_003687_030--Hb_000886_030 Hb_001728_020 Hb_001728_020 Hb_003687_030--Hb_001728_020 Hb_172632_050 Hb_172632_050 Hb_003687_030--Hb_172632_050 Hb_028707_070 Hb_028707_070 Hb_003687_030--Hb_028707_070 Hb_000529_280 Hb_000529_280 Hb_003687_030--Hb_000529_280 Hb_006907_100 Hb_006907_100 Hb_005000_250--Hb_006907_100 Hb_000302_130 Hb_000302_130 Hb_005000_250--Hb_000302_130 Hb_007136_010 Hb_007136_010 Hb_005000_250--Hb_007136_010 Hb_171718_020 Hb_171718_020 Hb_005000_250--Hb_171718_020 Hb_170674_010 Hb_170674_010 Hb_005000_250--Hb_170674_010 Hb_003305_030 Hb_003305_030 Hb_005000_250--Hb_003305_030 Hb_001022_040 Hb_001022_040 Hb_006816_400--Hb_001022_040 Hb_007951_130 Hb_007951_130 Hb_006816_400--Hb_007951_130 Hb_004241_010 Hb_004241_010 Hb_006816_400--Hb_004241_010 Hb_139138_010 Hb_139138_010 Hb_006816_400--Hb_139138_010 Hb_002043_110 Hb_002043_110 Hb_000504_110--Hb_002043_110 Hb_000504_110--Hb_001675_030 Hb_000504_110--Hb_003687_030 Hb_000307_120 Hb_000307_120 Hb_000504_110--Hb_000307_120 Hb_005363_010 Hb_005363_010 Hb_000504_110--Hb_005363_010 Hb_004724_450 Hb_004724_450 Hb_000504_110--Hb_004724_450 Hb_009976_010 Hb_009976_010 Hb_004102_030--Hb_009976_010 Hb_000612_040 Hb_000612_040 Hb_004102_030--Hb_000612_040 Hb_084889_010 Hb_084889_010 Hb_004102_030--Hb_084889_010 Hb_032974_010 Hb_032974_010 Hb_004102_030--Hb_032974_010 Hb_000275_130 Hb_000275_130 Hb_004102_030--Hb_000275_130 Hb_148891_010 Hb_148891_010 Hb_004102_030--Hb_148891_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0138665 0.14939 0.0630585 0.113889 0 0.0260787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.221149 0.0994188 0 0.0595343 0

CAGE analysis