Hb_002043_110

Information

Type -
Description -
Location Contig2043: 135147-135449
Sequence    

Annotation

kegg
ID pop:POPTR_0001s19500g
description POPTRDRAFT_640969; hypothetical protein
nr
ID XP_002298258.1
description hypothetical protein POPTR_0001s19500g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GH52
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s19500g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002043_110 0.0 - - hypothetical protein POPTR_0001s19500g [Populus trichocarpa]
2 Hb_000504_110 0.2099386928 - - F-box/LRR-repeat protein, putative [Ricinus communis]
3 Hb_001828_030 0.2488884505 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
4 Hb_007317_080 0.2876938913 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
5 Hb_026747_020 0.3063137183 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_001022_040 0.3134269022 - - PREDICTED: uncharacterized protein LOC105634753 [Jatropha curcas]
7 Hb_021888_120 0.3183983084 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
8 Hb_007951_130 0.3243998845 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
9 Hb_006816_400 0.3254853437 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
10 Hb_004724_450 0.326989789 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]
11 Hb_001979_030 0.3379859527 - - hypothetical protein POPTR_0016s06130g [Populus trichocarpa]
12 Hb_000205_200 0.3398595838 - - -
13 Hb_004116_130 0.3400935802 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
14 Hb_026740_010 0.3411263797 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
15 Hb_006120_090 0.3443706768 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
16 Hb_062006_010 0.3444830268 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_000005_400 0.3445855737 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
18 Hb_124996_010 0.3485498248 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
19 Hb_007553_010 0.3504718048 - - -
20 Hb_000096_130 0.3511872432 - - hypothetical protein 23 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002043_110 Hb_002043_110 Hb_000504_110 Hb_000504_110 Hb_002043_110--Hb_000504_110 Hb_001828_030 Hb_001828_030 Hb_002043_110--Hb_001828_030 Hb_007317_080 Hb_007317_080 Hb_002043_110--Hb_007317_080 Hb_026747_020 Hb_026747_020 Hb_002043_110--Hb_026747_020 Hb_001022_040 Hb_001022_040 Hb_002043_110--Hb_001022_040 Hb_021888_120 Hb_021888_120 Hb_002043_110--Hb_021888_120 Hb_001675_030 Hb_001675_030 Hb_000504_110--Hb_001675_030 Hb_003687_030 Hb_003687_030 Hb_000504_110--Hb_003687_030 Hb_000307_120 Hb_000307_120 Hb_000504_110--Hb_000307_120 Hb_005363_010 Hb_005363_010 Hb_000504_110--Hb_005363_010 Hb_004724_450 Hb_004724_450 Hb_000504_110--Hb_004724_450 Hb_001355_130 Hb_001355_130 Hb_001828_030--Hb_001355_130 Hb_001828_030--Hb_000504_110 Hb_000005_400 Hb_000005_400 Hb_001828_030--Hb_000005_400 Hb_007432_020 Hb_007432_020 Hb_001828_030--Hb_007432_020 Hb_000166_060 Hb_000166_060 Hb_001828_030--Hb_000166_060 Hb_002374_380 Hb_002374_380 Hb_007317_080--Hb_002374_380 Hb_000694_060 Hb_000694_060 Hb_007317_080--Hb_000694_060 Hb_007317_080--Hb_021888_120 Hb_000270_740 Hb_000270_740 Hb_007317_080--Hb_000270_740 Hb_017170_030 Hb_017170_030 Hb_007317_080--Hb_017170_030 Hb_007317_080--Hb_001675_030 Hb_003994_170 Hb_003994_170 Hb_026747_020--Hb_003994_170 Hb_001232_120 Hb_001232_120 Hb_026747_020--Hb_001232_120 Hb_009393_170 Hb_009393_170 Hb_026747_020--Hb_009393_170 Hb_000454_060 Hb_000454_060 Hb_026747_020--Hb_000454_060 Hb_000048_020 Hb_000048_020 Hb_026747_020--Hb_000048_020 Hb_006816_400 Hb_006816_400 Hb_001022_040--Hb_006816_400 Hb_000025_440 Hb_000025_440 Hb_001022_040--Hb_000025_440 Hb_111347_010 Hb_111347_010 Hb_001022_040--Hb_111347_010 Hb_004241_010 Hb_004241_010 Hb_001022_040--Hb_004241_010 Hb_000414_150 Hb_000414_150 Hb_001022_040--Hb_000414_150 Hb_007951_130 Hb_007951_130 Hb_001022_040--Hb_007951_130 Hb_007218_100 Hb_007218_100 Hb_021888_120--Hb_007218_100 Hb_000096_130 Hb_000096_130 Hb_021888_120--Hb_000096_130 Hb_021888_120--Hb_007951_130 Hb_000692_020 Hb_000692_020 Hb_021888_120--Hb_000692_020 Hb_002260_160 Hb_002260_160 Hb_021888_120--Hb_002260_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.844035 0 1.62771 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.1904 2.01247 0 1.73224 0

CAGE analysis