Hb_001232_120

Information

Type -
Description -
Location Contig1232: 90040-90638
Sequence    

Annotation

kegg
ID mdm:103417302
description pentatricopeptide repeat-containing protein At3g16010-like
nr
ID XP_012073332.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
swissprot
ID Q9LW84
description Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
trembl
ID A0A067KZG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001232_120 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
2 Hb_000048_020 0.2276258835 - - -
3 Hb_026747_020 0.2367264064 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_003994_170 0.277527059 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
5 Hb_004525_060 0.2837923168 - - -
6 Hb_012807_010 0.2929705153 - - -
7 Hb_000107_640 0.3093373316 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000031_040 0.3329884853 - - centromere protein O [Medicago truncatula]
9 Hb_001959_300 0.3330734543 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
10 Hb_009393_170 0.3345837706 - - PREDICTED: vestitone reductase-like [Jatropha curcas]
11 Hb_005009_020 0.3381609474 - - -
12 Hb_010288_040 0.3395366647 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
13 Hb_000317_360 0.3435903424 - - PREDICTED: GDSL esterase/lipase At5g08460 [Jatropha curcas]
14 Hb_004195_180 0.3475542658 - - unnamed protein product [Coffea canephora]
15 Hb_001504_120 0.3564401403 - - -
16 Hb_000454_060 0.3594081267 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
17 Hb_001733_060 0.3596684293 - - PREDICTED: uncharacterized protein LOC104431099 [Eucalyptus grandis]
18 Hb_009780_080 0.3627227479 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_175572_010 0.3656733343 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_141383_010 0.3659518272 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]

Gene co-expression network

sample Hb_001232_120 Hb_001232_120 Hb_000048_020 Hb_000048_020 Hb_001232_120--Hb_000048_020 Hb_026747_020 Hb_026747_020 Hb_001232_120--Hb_026747_020 Hb_003994_170 Hb_003994_170 Hb_001232_120--Hb_003994_170 Hb_004525_060 Hb_004525_060 Hb_001232_120--Hb_004525_060 Hb_012807_010 Hb_012807_010 Hb_001232_120--Hb_012807_010 Hb_000107_640 Hb_000107_640 Hb_001232_120--Hb_000107_640 Hb_000048_020--Hb_004525_060 Hb_008289_050 Hb_008289_050 Hb_000048_020--Hb_008289_050 Hb_021943_030 Hb_021943_030 Hb_000048_020--Hb_021943_030 Hb_010288_040 Hb_010288_040 Hb_000048_020--Hb_010288_040 Hb_027472_230 Hb_027472_230 Hb_000048_020--Hb_027472_230 Hb_026747_020--Hb_003994_170 Hb_009393_170 Hb_009393_170 Hb_026747_020--Hb_009393_170 Hb_002043_110 Hb_002043_110 Hb_026747_020--Hb_002043_110 Hb_000454_060 Hb_000454_060 Hb_026747_020--Hb_000454_060 Hb_026747_020--Hb_000048_020 Hb_003994_170--Hb_009393_170 Hb_003994_170--Hb_000454_060 Hb_004116_130 Hb_004116_130 Hb_003994_170--Hb_004116_130 Hb_000317_400 Hb_000317_400 Hb_003994_170--Hb_000317_400 Hb_004525_060--Hb_000454_060 Hb_009780_080 Hb_009780_080 Hb_004525_060--Hb_009780_080 Hb_004525_060--Hb_010288_040 Hb_096224_020 Hb_096224_020 Hb_004525_060--Hb_096224_020 Hb_132998_020 Hb_132998_020 Hb_004525_060--Hb_132998_020 Hb_001959_300 Hb_001959_300 Hb_012807_010--Hb_001959_300 Hb_005009_020 Hb_005009_020 Hb_012807_010--Hb_005009_020 Hb_003963_020 Hb_003963_020 Hb_012807_010--Hb_003963_020 Hb_003209_030 Hb_003209_030 Hb_012807_010--Hb_003209_030 Hb_000331_320 Hb_000331_320 Hb_012807_010--Hb_000331_320 Hb_116349_010 Hb_116349_010 Hb_012807_010--Hb_116349_010 Hb_175572_010 Hb_175572_010 Hb_000107_640--Hb_175572_010 Hb_003116_020 Hb_003116_020 Hb_000107_640--Hb_003116_020 Hb_000395_060 Hb_000395_060 Hb_000107_640--Hb_000395_060 Hb_005408_040 Hb_005408_040 Hb_000107_640--Hb_005408_040 Hb_005063_070 Hb_005063_070 Hb_000107_640--Hb_005063_070 Hb_000107_640--Hb_005009_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0462485 0 0 0 0.0952863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.126325 0.0992499 0 0.164493 0

CAGE analysis