Hb_012807_010

Information

Type -
Description -
Location Contig12807: 2059-4151
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012807_010 0.0 - - -
2 Hb_001959_300 0.2292357933 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
3 Hb_005009_020 0.2639493485 - - -
4 Hb_003963_020 0.2700743926 - - PREDICTED: uncharacterized protein LOC100256672 [Vitis vinifera]
5 Hb_003209_030 0.2734995166 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
6 Hb_000331_320 0.2736886634 - - -
7 Hb_116349_010 0.2831595199 - - PREDICTED: uncharacterized protein LOC105763153 [Gossypium raimondii]
8 Hb_004129_030 0.2851677054 - - PREDICTED: cytochrome b561 domain-containing protein At2g30890-like isoform X2 [Populus euphratica]
9 Hb_004525_060 0.2907832978 - - -
10 Hb_001232_120 0.2929705153 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
11 Hb_132998_020 0.2989721111 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
12 Hb_092820_020 0.2992385985 - - ATP binding protein, putative [Ricinus communis]
13 Hb_002983_060 0.3065776509 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
14 Hb_000061_350 0.3097059822 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012754_040 0.3156800625 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
16 Hb_001017_120 0.3169600238 - - -
17 Hb_079268_010 0.3173047133 - - -
18 Hb_000395_060 0.326889435 - - -
19 Hb_065866_010 0.3271644001 - - PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
20 Hb_004680_020 0.3304339019 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105789475 [Gossypium raimondii]

Gene co-expression network

sample Hb_012807_010 Hb_012807_010 Hb_001959_300 Hb_001959_300 Hb_012807_010--Hb_001959_300 Hb_005009_020 Hb_005009_020 Hb_012807_010--Hb_005009_020 Hb_003963_020 Hb_003963_020 Hb_012807_010--Hb_003963_020 Hb_003209_030 Hb_003209_030 Hb_012807_010--Hb_003209_030 Hb_000331_320 Hb_000331_320 Hb_012807_010--Hb_000331_320 Hb_116349_010 Hb_116349_010 Hb_012807_010--Hb_116349_010 Hb_000395_060 Hb_000395_060 Hb_001959_300--Hb_000395_060 Hb_001959_300--Hb_003963_020 Hb_001959_300--Hb_005009_020 Hb_007409_020 Hb_007409_020 Hb_001959_300--Hb_007409_020 Hb_004691_040 Hb_004691_040 Hb_001959_300--Hb_004691_040 Hb_004680_020 Hb_004680_020 Hb_005009_020--Hb_004680_020 Hb_000847_140 Hb_000847_140 Hb_005009_020--Hb_000847_140 Hb_008699_040 Hb_008699_040 Hb_005009_020--Hb_008699_040 Hb_080147_090 Hb_080147_090 Hb_005009_020--Hb_080147_090 Hb_075653_020 Hb_075653_020 Hb_005009_020--Hb_075653_020 Hb_005009_020--Hb_000395_060 Hb_000061_350 Hb_000061_350 Hb_003963_020--Hb_000061_350 Hb_000107_370 Hb_000107_370 Hb_003963_020--Hb_000107_370 Hb_048197_010 Hb_048197_010 Hb_003963_020--Hb_048197_010 Hb_003963_020--Hb_004691_040 Hb_003312_010 Hb_003312_010 Hb_003963_020--Hb_003312_010 Hb_003209_030--Hb_000331_320 Hb_008667_050 Hb_008667_050 Hb_003209_030--Hb_008667_050 Hb_000453_210 Hb_000453_210 Hb_003209_030--Hb_000453_210 Hb_000529_240 Hb_000529_240 Hb_003209_030--Hb_000529_240 Hb_001495_060 Hb_001495_060 Hb_003209_030--Hb_001495_060 Hb_001047_140 Hb_001047_140 Hb_003209_030--Hb_001047_140 Hb_000331_320--Hb_008667_050 Hb_000331_320--Hb_001047_140 Hb_005690_020 Hb_005690_020 Hb_000331_320--Hb_005690_020 Hb_000331_320--Hb_000529_240 Hb_000331_320--Hb_000453_210 Hb_002983_060 Hb_002983_060 Hb_116349_010--Hb_002983_060 Hb_010422_080 Hb_010422_080 Hb_116349_010--Hb_010422_080 Hb_000487_280 Hb_000487_280 Hb_116349_010--Hb_000487_280 Hb_000011_340 Hb_000011_340 Hb_116349_010--Hb_000011_340 Hb_001520_020 Hb_001520_020 Hb_116349_010--Hb_001520_020 Hb_116349_010--Hb_001959_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0306094 0 0 0.0729945 0.0484621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.167816 0.131921 0 0.134345 0

CAGE analysis