Hb_003963_020

Information

Type -
Description -
Location Contig3963: 13540-16975
Sequence    

Annotation

kegg
ID vvi:100256672
description uncharacterized LOC100256672
nr
ID XP_010656676.1
description PREDICTED: uncharacterized protein LOC100256672 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B1X8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0078g00260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003963_020 0.0 - - PREDICTED: uncharacterized protein LOC100256672 [Vitis vinifera]
2 Hb_000061_350 0.1830213032 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001959_300 0.2209393926 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
4 Hb_000107_370 0.2387705717 - - PREDICTED: uncharacterized protein At2g17340-like isoform X1 [Jatropha curcas]
5 Hb_048197_010 0.2518662495 - - -
6 Hb_004691_040 0.2544538331 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
7 Hb_003312_010 0.2552052403 - - PREDICTED: uncharacterized protein LOC104428797 [Eucalyptus grandis]
8 Hb_170305_020 0.2599526311 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
9 Hb_003209_030 0.2664312521 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
10 Hb_007409_020 0.2668819303 - - -
11 Hb_012807_010 0.2700743926 - - -
12 Hb_036369_010 0.2762905401 - - -
13 Hb_004449_010 0.276827441 - - lipase [Ricinus communis]
14 Hb_142522_010 0.2784359051 - - -
15 Hb_005690_020 0.2784998105 - - hypothetical protein POPTR_0006s08200g [Populus trichocarpa]
16 Hb_132998_020 0.2791889976 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
17 Hb_035905_010 0.2819839598 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
18 Hb_002896_080 0.283611963 - - -
19 Hb_000529_100 0.2840336278 - - hypothetical protein POPTR_0009s05980g [Populus trichocarpa]
20 Hb_001021_230 0.2840628283 - - -

Gene co-expression network

sample Hb_003963_020 Hb_003963_020 Hb_000061_350 Hb_000061_350 Hb_003963_020--Hb_000061_350 Hb_001959_300 Hb_001959_300 Hb_003963_020--Hb_001959_300 Hb_000107_370 Hb_000107_370 Hb_003963_020--Hb_000107_370 Hb_048197_010 Hb_048197_010 Hb_003963_020--Hb_048197_010 Hb_004691_040 Hb_004691_040 Hb_003963_020--Hb_004691_040 Hb_003312_010 Hb_003312_010 Hb_003963_020--Hb_003312_010 Hb_003209_030 Hb_003209_030 Hb_000061_350--Hb_003209_030 Hb_000061_350--Hb_000107_370 Hb_000061_350--Hb_048197_010 Hb_035905_010 Hb_035905_010 Hb_000061_350--Hb_035905_010 Hb_002301_240 Hb_002301_240 Hb_000061_350--Hb_002301_240 Hb_000395_060 Hb_000395_060 Hb_001959_300--Hb_000395_060 Hb_012807_010 Hb_012807_010 Hb_001959_300--Hb_012807_010 Hb_005009_020 Hb_005009_020 Hb_001959_300--Hb_005009_020 Hb_007409_020 Hb_007409_020 Hb_001959_300--Hb_007409_020 Hb_001959_300--Hb_004691_040 Hb_000163_200 Hb_000163_200 Hb_000107_370--Hb_000163_200 Hb_030565_070 Hb_030565_070 Hb_000107_370--Hb_030565_070 Hb_003751_120 Hb_003751_120 Hb_000107_370--Hb_003751_120 Hb_054301_010 Hb_054301_010 Hb_000107_370--Hb_054301_010 Hb_031403_010 Hb_031403_010 Hb_000107_370--Hb_031403_010 Hb_000107_370--Hb_007409_020 Hb_036369_010 Hb_036369_010 Hb_048197_010--Hb_036369_010 Hb_170305_020 Hb_170305_020 Hb_048197_010--Hb_170305_020 Hb_001248_020 Hb_001248_020 Hb_048197_010--Hb_001248_020 Hb_002821_010 Hb_002821_010 Hb_048197_010--Hb_002821_010 Hb_077562_040 Hb_077562_040 Hb_048197_010--Hb_077562_040 Hb_023675_010 Hb_023675_010 Hb_048197_010--Hb_023675_010 Hb_004116_110 Hb_004116_110 Hb_004691_040--Hb_004116_110 Hb_004691_040--Hb_035905_010 Hb_015675_060 Hb_015675_060 Hb_004691_040--Hb_015675_060 Hb_002742_010 Hb_002742_010 Hb_004691_040--Hb_002742_010 Hb_000373_300 Hb_000373_300 Hb_004691_040--Hb_000373_300 Hb_004055_060 Hb_004055_060 Hb_004691_040--Hb_004055_060 Hb_012052_060 Hb_012052_060 Hb_003312_010--Hb_012052_060 Hb_000877_060 Hb_000877_060 Hb_003312_010--Hb_000877_060 Hb_003159_080 Hb_003159_080 Hb_003312_010--Hb_003159_080 Hb_005625_040 Hb_005625_040 Hb_003312_010--Hb_005625_040 Hb_000442_100 Hb_000442_100 Hb_003312_010--Hb_000442_100 Hb_112399_010 Hb_112399_010 Hb_003312_010--Hb_112399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.229217 0.0308655 0.0277149 0 0.426908 0.440933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.592239 0.532065 0 0.51489 0

CAGE analysis