Hb_005625_040

Information

Type -
Description -
Location Contig5625: 57709-58044
Sequence    

Annotation

kegg
ID rcu:RCOM_1365250
description snf1-kinase beta subunit, plants, putative
nr
ID XP_002515602.1
description snf1-kinase beta subunit, plants, putative [Ricinus communis]
swissprot
ID Q9ZUU8
description SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana GN=KINB3 PE=1 SV=1
trembl
ID B9RPD3
description Snf1-kinase beta subunit, plants, putative OS=Ricinus communis GN=RCOM_1365250 PE=4 SV=1
Gene Ontology
ID GO:0016301
description snf1-related protein kinase regulatory subunit beta-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48874: 57633-84753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005625_040 0.0 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
2 Hb_000009_590 0.1308140523 - - PREDICTED: prolyl endopeptidase-like isoform X1 [Jatropha curcas]
3 Hb_006816_500 0.1505856362 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
4 Hb_000041_220 0.1517654652 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
5 Hb_001514_200 0.156894208 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
6 Hb_004586_190 0.1575061607 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
7 Hb_006816_320 0.1591706696 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
8 Hb_001975_070 0.1663786679 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
9 Hb_000059_040 0.1670010434 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
10 Hb_119583_010 0.1673818538 - - 60S ribosomal protein L12A [Hevea brasiliensis]
11 Hb_003073_200 0.1685125991 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
12 Hb_000002_330 0.1699560926 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
13 Hb_003911_040 0.169966957 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
14 Hb_006816_150 0.1702264445 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
15 Hb_054380_010 0.1705051466 - - -
16 Hb_000891_040 0.1708381997 - - hypothetical protein JCGZ_11252 [Jatropha curcas]
17 Hb_000035_380 0.1716194179 - - -
18 Hb_143766_090 0.171679929 - - 60S ribosomal protein L31B [Hevea brasiliensis]
19 Hb_010810_050 0.1730443014 - - hypothetical protein [Cleome spinosa]
20 Hb_000847_070 0.1731571231 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]

Gene co-expression network

sample Hb_005625_040 Hb_005625_040 Hb_000009_590 Hb_000009_590 Hb_005625_040--Hb_000009_590 Hb_006816_500 Hb_006816_500 Hb_005625_040--Hb_006816_500 Hb_000041_220 Hb_000041_220 Hb_005625_040--Hb_000041_220 Hb_001514_200 Hb_001514_200 Hb_005625_040--Hb_001514_200 Hb_004586_190 Hb_004586_190 Hb_005625_040--Hb_004586_190 Hb_006816_320 Hb_006816_320 Hb_005625_040--Hb_006816_320 Hb_003073_200 Hb_003073_200 Hb_000009_590--Hb_003073_200 Hb_000009_590--Hb_000041_220 Hb_000009_590--Hb_006816_320 Hb_000236_300 Hb_000236_300 Hb_000009_590--Hb_000236_300 Hb_002505_040 Hb_002505_040 Hb_000009_590--Hb_002505_040 Hb_000398_190 Hb_000398_190 Hb_000009_590--Hb_000398_190 Hb_000002_330 Hb_000002_330 Hb_006816_500--Hb_000002_330 Hb_000141_060 Hb_000141_060 Hb_006816_500--Hb_000141_060 Hb_143766_090 Hb_143766_090 Hb_006816_500--Hb_143766_090 Hb_010128_130 Hb_010128_130 Hb_006816_500--Hb_010128_130 Hb_000322_050 Hb_000322_050 Hb_006816_500--Hb_000322_050 Hb_003544_090 Hb_003544_090 Hb_006816_500--Hb_003544_090 Hb_000041_220--Hb_006816_320 Hb_002046_040 Hb_002046_040 Hb_000041_220--Hb_002046_040 Hb_000041_220--Hb_000398_190 Hb_000284_210 Hb_000284_210 Hb_000041_220--Hb_000284_210 Hb_000236_370 Hb_000236_370 Hb_000041_220--Hb_000236_370 Hb_009620_040 Hb_009620_040 Hb_000041_220--Hb_009620_040 Hb_000847_070 Hb_000847_070 Hb_001514_200--Hb_000847_070 Hb_004096_170 Hb_004096_170 Hb_001514_200--Hb_004096_170 Hb_000284_200 Hb_000284_200 Hb_001514_200--Hb_000284_200 Hb_002377_050 Hb_002377_050 Hb_001514_200--Hb_002377_050 Hb_003605_070 Hb_003605_070 Hb_001514_200--Hb_003605_070 Hb_002681_140 Hb_002681_140 Hb_001514_200--Hb_002681_140 Hb_000172_400 Hb_000172_400 Hb_004586_190--Hb_000172_400 Hb_003638_030 Hb_003638_030 Hb_004586_190--Hb_003638_030 Hb_002207_100 Hb_002207_100 Hb_004586_190--Hb_002207_100 Hb_002007_270 Hb_002007_270 Hb_004586_190--Hb_002007_270 Hb_000371_110 Hb_000371_110 Hb_004586_190--Hb_000371_110 Hb_026048_100 Hb_026048_100 Hb_004586_190--Hb_026048_100 Hb_006816_320--Hb_000236_370 Hb_012670_140 Hb_012670_140 Hb_006816_320--Hb_012670_140 Hb_000684_420 Hb_000684_420 Hb_006816_320--Hb_000684_420 Hb_000076_080 Hb_000076_080 Hb_006816_320--Hb_000076_080 Hb_000803_150 Hb_000803_150 Hb_006816_320--Hb_000803_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2034 12.669 3.62018 0 23.9553 34.9122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7254 27.2022 8.09845 11.8363 1.1052

CAGE analysis