Hb_000107_640

Information

Type -
Description -
Location Contig107: 490397-491216
Sequence    

Annotation

kegg
ID rcu:RCOM_1252880
description hypothetical protein
nr
ID XP_002522284.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8G5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1252880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_640 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_175572_010 0.1335685385 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_003116_020 0.1523538622 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
4 Hb_000395_060 0.1932861805 - - -
5 Hb_005408_040 0.2088593998 - - -
6 Hb_005063_070 0.2282432445 - - PREDICTED: PRA1 family protein E [Jatropha curcas]
7 Hb_005009_020 0.2335150456 - - -
8 Hb_004297_030 0.2472126307 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
9 Hb_088496_010 0.2502478632 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
10 Hb_003602_050 0.2693361725 - - zinc binding dehydrogenase, putative [Ricinus communis]
11 Hb_000847_140 0.2695940674 - - -
12 Hb_002636_020 0.2756427124 - - -
13 Hb_001959_300 0.282730737 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
14 Hb_015091_010 0.2830697153 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
15 Hb_000003_770 0.2881476234 - - -
16 Hb_000348_040 0.2940045779 - - -
17 Hb_094721_010 0.294082967 - - PREDICTED: uncharacterized protein LOC104809818, partial [Tarenaya hassleriana]
18 Hb_012324_020 0.2950917017 - - -
19 Hb_008699_040 0.3024327032 - - -
20 Hb_012305_120 0.3045222297 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]

Gene co-expression network

sample Hb_000107_640 Hb_000107_640 Hb_175572_010 Hb_175572_010 Hb_000107_640--Hb_175572_010 Hb_003116_020 Hb_003116_020 Hb_000107_640--Hb_003116_020 Hb_000395_060 Hb_000395_060 Hb_000107_640--Hb_000395_060 Hb_005408_040 Hb_005408_040 Hb_000107_640--Hb_005408_040 Hb_005063_070 Hb_005063_070 Hb_000107_640--Hb_005063_070 Hb_005009_020 Hb_005009_020 Hb_000107_640--Hb_005009_020 Hb_175572_010--Hb_003116_020 Hb_175572_010--Hb_000395_060 Hb_007761_050 Hb_007761_050 Hb_175572_010--Hb_007761_050 Hb_001257_020 Hb_001257_020 Hb_175572_010--Hb_001257_020 Hb_088496_010 Hb_088496_010 Hb_175572_010--Hb_088496_010 Hb_015091_010 Hb_015091_010 Hb_003116_020--Hb_015091_010 Hb_004297_030 Hb_004297_030 Hb_003116_020--Hb_004297_030 Hb_003116_020--Hb_088496_010 Hb_063511_010 Hb_063511_010 Hb_003116_020--Hb_063511_010 Hb_000395_060--Hb_005408_040 Hb_001959_300 Hb_001959_300 Hb_000395_060--Hb_001959_300 Hb_009954_050 Hb_009954_050 Hb_000395_060--Hb_009954_050 Hb_000395_060--Hb_005009_020 Hb_012324_020 Hb_012324_020 Hb_005408_040--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_005408_040--Hb_094721_010 Hb_000003_770 Hb_000003_770 Hb_005408_040--Hb_000003_770 Hb_001379_130 Hb_001379_130 Hb_005408_040--Hb_001379_130 Hb_001951_280 Hb_001951_280 Hb_005063_070--Hb_001951_280 Hb_005063_070--Hb_063511_010 Hb_157340_010 Hb_157340_010 Hb_005063_070--Hb_157340_010 Hb_005063_070--Hb_015091_010 Hb_000348_040 Hb_000348_040 Hb_005063_070--Hb_000348_040 Hb_004680_020 Hb_004680_020 Hb_005009_020--Hb_004680_020 Hb_000847_140 Hb_000847_140 Hb_005009_020--Hb_000847_140 Hb_008699_040 Hb_008699_040 Hb_005009_020--Hb_008699_040 Hb_080147_090 Hb_080147_090 Hb_005009_020--Hb_080147_090 Hb_075653_020 Hb_075653_020 Hb_005009_020--Hb_075653_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0688355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104876 0.082419 0 0.0338523 0

CAGE analysis