Hb_003116_020

Information

Type -
Description -
Location Contig3116: 4057-15282
Sequence    

Annotation

kegg
ID pda:103718820
description uncharacterized LOC103718820
nr
ID XP_012477608.1
description PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID Q7FAG7
description OSJNBa0084K01.26 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0084K01.26 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003116_020 0.0 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
2 Hb_175572_010 0.1210837725 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_000107_640 0.1523538622 - - conserved hypothetical protein [Ricinus communis]
4 Hb_015091_010 0.2237047439 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
5 Hb_004297_030 0.2361631382 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
6 Hb_088496_010 0.2493039535 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
7 Hb_063511_010 0.2545367599 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
8 Hb_007761_050 0.2646223355 - - calcineurin-like protein [Hevea brasiliensis]
9 Hb_003602_050 0.2771075924 - - zinc binding dehydrogenase, putative [Ricinus communis]
10 Hb_005063_070 0.2793422333 - - PREDICTED: PRA1 family protein E [Jatropha curcas]
11 Hb_000395_060 0.28946781 - - -
12 Hb_000563_270 0.2927140204 - - -
13 Hb_000348_040 0.2936007508 - - -
14 Hb_001257_020 0.2990065832 - - -
15 Hb_000847_140 0.2997119048 - - -
16 Hb_005009_020 0.3042264677 - - -
17 Hb_006501_030 0.30562034 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
18 Hb_001951_280 0.3087258495 - - -
19 Hb_030765_010 0.3116054781 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
20 Hb_004586_450 0.311754042 - - -

Gene co-expression network

sample Hb_003116_020 Hb_003116_020 Hb_175572_010 Hb_175572_010 Hb_003116_020--Hb_175572_010 Hb_000107_640 Hb_000107_640 Hb_003116_020--Hb_000107_640 Hb_015091_010 Hb_015091_010 Hb_003116_020--Hb_015091_010 Hb_004297_030 Hb_004297_030 Hb_003116_020--Hb_004297_030 Hb_088496_010 Hb_088496_010 Hb_003116_020--Hb_088496_010 Hb_063511_010 Hb_063511_010 Hb_003116_020--Hb_063511_010 Hb_175572_010--Hb_000107_640 Hb_000395_060 Hb_000395_060 Hb_175572_010--Hb_000395_060 Hb_007761_050 Hb_007761_050 Hb_175572_010--Hb_007761_050 Hb_001257_020 Hb_001257_020 Hb_175572_010--Hb_001257_020 Hb_175572_010--Hb_088496_010 Hb_000107_640--Hb_000395_060 Hb_005408_040 Hb_005408_040 Hb_000107_640--Hb_005408_040 Hb_005063_070 Hb_005063_070 Hb_000107_640--Hb_005063_070 Hb_005009_020 Hb_005009_020 Hb_000107_640--Hb_005009_020 Hb_015091_010--Hb_063511_010 Hb_001951_280 Hb_001951_280 Hb_015091_010--Hb_001951_280 Hb_015091_010--Hb_004297_030 Hb_000348_040 Hb_000348_040 Hb_015091_010--Hb_000348_040 Hb_015091_010--Hb_088496_010 Hb_006501_030 Hb_006501_030 Hb_015091_010--Hb_006501_030 Hb_004297_030--Hb_088496_010 Hb_000003_770 Hb_000003_770 Hb_004297_030--Hb_000003_770 Hb_094721_010 Hb_094721_010 Hb_004297_030--Hb_094721_010 Hb_012324_020 Hb_012324_020 Hb_004297_030--Hb_012324_020 Hb_004297_030--Hb_000348_040 Hb_088496_010--Hb_000003_770 Hb_088496_010--Hb_094721_010 Hb_001379_130 Hb_001379_130 Hb_088496_010--Hb_001379_130 Hb_088496_010--Hb_012324_020 Hb_088496_010--Hb_001257_020 Hb_063511_010--Hb_001951_280 Hb_169488_010 Hb_169488_010 Hb_063511_010--Hb_169488_010 Hb_003702_050 Hb_003702_050 Hb_063511_010--Hb_003702_050 Hb_063511_010--Hb_000348_040 Hb_063511_010--Hb_006501_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0453707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0589302 0.0231816 0 0.00924693 0

CAGE analysis