Hb_009393_170

Information

Type -
Description -
Location Contig9393: 136794-137959
Sequence    

Annotation

kegg
ID pop:POPTR_0002s14890g
description POPTRDRAFT_850153; hypothetical protein
nr
ID XP_012083577.1
description PREDICTED: vestitone reductase-like [Jatropha curcas]
swissprot
ID Q40316
description Vestitone reductase OS=Medicago sativa PE=1 SV=1
trembl
ID A0A067JXT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14527 PE=4 SV=1
Gene Ontology
ID GO:0016491
description vestitone reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_170 0.0 - - PREDICTED: vestitone reductase-like [Jatropha curcas]
2 Hb_000087_050 0.2056841901 - - hypothetical protein JCGZ_16227 [Jatropha curcas]
3 Hb_001183_010 0.2211539423 - - -
4 Hb_011861_120 0.2259438771 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
5 Hb_002234_190 0.2263483477 - - PREDICTED: putative non-specific lipid-transfer protein 14 [Jatropha curcas]
6 Hb_002876_290 0.226600191 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
7 Hb_112023_010 0.2315922384 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
8 Hb_145979_010 0.2330408116 - - PREDICTED: uncharacterized protein LOC105172316 [Sesamum indicum]
9 Hb_001902_190 0.2352589448 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
10 Hb_081745_010 0.2393509827 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
11 Hb_003994_170 0.2428710306 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
12 Hb_004230_040 0.2432861976 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010727_010 0.2441053311 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
14 Hb_073395_010 0.2487170809 - - -
15 Hb_000796_250 0.2499268991 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
16 Hb_004788_040 0.2515967509 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_006588_150 0.2523427288 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
18 Hb_006111_080 0.2524937456 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
19 Hb_008790_020 0.2531254256 - - PREDICTED: uncharacterized protein LOC105638122 [Jatropha curcas]
20 Hb_003623_070 0.2590324124 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009393_170 Hb_009393_170 Hb_000087_050 Hb_000087_050 Hb_009393_170--Hb_000087_050 Hb_001183_010 Hb_001183_010 Hb_009393_170--Hb_001183_010 Hb_011861_120 Hb_011861_120 Hb_009393_170--Hb_011861_120 Hb_002234_190 Hb_002234_190 Hb_009393_170--Hb_002234_190 Hb_002876_290 Hb_002876_290 Hb_009393_170--Hb_002876_290 Hb_112023_010 Hb_112023_010 Hb_009393_170--Hb_112023_010 Hb_000748_080 Hb_000748_080 Hb_000087_050--Hb_000748_080 Hb_006111_080 Hb_006111_080 Hb_000087_050--Hb_006111_080 Hb_145979_010 Hb_145979_010 Hb_000087_050--Hb_145979_010 Hb_111198_020 Hb_111198_020 Hb_000087_050--Hb_111198_020 Hb_023732_090 Hb_023732_090 Hb_000087_050--Hb_023732_090 Hb_003494_200 Hb_003494_200 Hb_000087_050--Hb_003494_200 Hb_010727_010 Hb_010727_010 Hb_001183_010--Hb_010727_010 Hb_081745_010 Hb_081745_010 Hb_001183_010--Hb_081745_010 Hb_088753_010 Hb_088753_010 Hb_001183_010--Hb_088753_010 Hb_000402_210 Hb_000402_210 Hb_001183_010--Hb_000402_210 Hb_000451_070 Hb_000451_070 Hb_001183_010--Hb_000451_070 Hb_000016_100 Hb_000016_100 Hb_001183_010--Hb_000016_100 Hb_008790_020 Hb_008790_020 Hb_011861_120--Hb_008790_020 Hb_002236_050 Hb_002236_050 Hb_011861_120--Hb_002236_050 Hb_025336_020 Hb_025336_020 Hb_011861_120--Hb_025336_020 Hb_001726_110 Hb_001726_110 Hb_011861_120--Hb_001726_110 Hb_049436_010 Hb_049436_010 Hb_011861_120--Hb_049436_010 Hb_000094_370 Hb_000094_370 Hb_011861_120--Hb_000094_370 Hb_073395_010 Hb_073395_010 Hb_002234_190--Hb_073395_010 Hb_037767_010 Hb_037767_010 Hb_002234_190--Hb_037767_010 Hb_006502_050 Hb_006502_050 Hb_002234_190--Hb_006502_050 Hb_002234_190--Hb_081745_010 Hb_002234_190--Hb_002876_290 Hb_001902_190 Hb_001902_190 Hb_002234_190--Hb_001902_190 Hb_006588_150 Hb_006588_150 Hb_002876_290--Hb_006588_150 Hb_009476_140 Hb_009476_140 Hb_002876_290--Hb_009476_140 Hb_003211_010 Hb_003211_010 Hb_002876_290--Hb_003211_010 Hb_000025_340 Hb_000025_340 Hb_002876_290--Hb_000025_340 Hb_002876_290--Hb_073395_010 Hb_002876_290--Hb_037767_010 Hb_089497_010 Hb_089497_010 Hb_112023_010--Hb_089497_010 Hb_001514_130 Hb_001514_130 Hb_112023_010--Hb_001514_130 Hb_004586_280 Hb_004586_280 Hb_112023_010--Hb_004586_280 Hb_112023_010--Hb_111198_020 Hb_000227_060 Hb_000227_060 Hb_112023_010--Hb_000227_060 Hb_000200_280 Hb_000200_280 Hb_112023_010--Hb_000200_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03277 3.36548 0 1.07398 0.257269 2.08317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.22749 2.1515 0.0995175 3.82228 0.331232

CAGE analysis