Hb_145979_010

Information

Type -
Description -
Location Contig145979: 10-549
Sequence    

Annotation

kegg
ID pda:103700431
description uncharacterized LOC103700431
nr
ID XP_011092001.1
description PREDICTED: uncharacterized protein LOC105172316 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145979_010 0.0 - - PREDICTED: uncharacterized protein LOC105172316 [Sesamum indicum]
2 Hb_000087_050 0.1504301988 - - hypothetical protein JCGZ_16227 [Jatropha curcas]
3 Hb_000016_100 0.1517559286 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
4 Hb_010727_010 0.1745728031 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
5 Hb_000923_050 0.1936144174 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
6 Hb_001477_130 0.1954389213 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
7 Hb_001016_110 0.198677179 desease resistance Gene Name: Lectin_legB hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
8 Hb_002400_400 0.1991139322 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
9 Hb_015292_030 0.1999111452 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
10 Hb_001183_010 0.2002941217 - - -
11 Hb_009838_050 0.2017717567 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004230_040 0.2023690351 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012052_060 0.2051549445 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
14 Hb_000025_340 0.2052401374 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
15 Hb_006111_080 0.2058746613 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
16 Hb_011828_020 0.2084041773 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
17 Hb_087596_010 0.2091221993 - - PREDICTED: disease resistance protein RPS4-like [Jatropha curcas]
18 Hb_004032_270 0.2092190742 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
19 Hb_000381_080 0.2101345998 transcription factor TF Family: SNF2 PREDICTED: DNA repair protein RAD16 [Jatropha curcas]
20 Hb_000329_650 0.2114885999 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_145979_010 Hb_145979_010 Hb_000087_050 Hb_000087_050 Hb_145979_010--Hb_000087_050 Hb_000016_100 Hb_000016_100 Hb_145979_010--Hb_000016_100 Hb_010727_010 Hb_010727_010 Hb_145979_010--Hb_010727_010 Hb_000923_050 Hb_000923_050 Hb_145979_010--Hb_000923_050 Hb_001477_130 Hb_001477_130 Hb_145979_010--Hb_001477_130 Hb_001016_110 Hb_001016_110 Hb_145979_010--Hb_001016_110 Hb_000748_080 Hb_000748_080 Hb_000087_050--Hb_000748_080 Hb_006111_080 Hb_006111_080 Hb_000087_050--Hb_006111_080 Hb_111198_020 Hb_111198_020 Hb_000087_050--Hb_111198_020 Hb_023732_090 Hb_023732_090 Hb_000087_050--Hb_023732_090 Hb_003494_200 Hb_003494_200 Hb_000087_050--Hb_003494_200 Hb_004032_270 Hb_004032_270 Hb_000016_100--Hb_004032_270 Hb_009838_050 Hb_009838_050 Hb_000016_100--Hb_009838_050 Hb_006582_020 Hb_006582_020 Hb_000016_100--Hb_006582_020 Hb_002435_110 Hb_002435_110 Hb_000016_100--Hb_002435_110 Hb_000025_340 Hb_000025_340 Hb_000016_100--Hb_000025_340 Hb_000390_150 Hb_000390_150 Hb_000016_100--Hb_000390_150 Hb_001183_010 Hb_001183_010 Hb_010727_010--Hb_001183_010 Hb_010727_010--Hb_000025_340 Hb_081745_010 Hb_081745_010 Hb_010727_010--Hb_081745_010 Hb_141918_010 Hb_141918_010 Hb_010727_010--Hb_141918_010 Hb_010727_010--Hb_000087_050 Hb_002272_080 Hb_002272_080 Hb_010727_010--Hb_002272_080 Hb_011828_020 Hb_011828_020 Hb_000923_050--Hb_011828_020 Hb_000329_650 Hb_000329_650 Hb_000923_050--Hb_000329_650 Hb_000395_080 Hb_000395_080 Hb_000923_050--Hb_000395_080 Hb_007441_230 Hb_007441_230 Hb_000923_050--Hb_007441_230 Hb_000696_340 Hb_000696_340 Hb_000923_050--Hb_000696_340 Hb_002333_080 Hb_002333_080 Hb_000923_050--Hb_002333_080 Hb_004223_280 Hb_004223_280 Hb_001477_130--Hb_004223_280 Hb_002685_170 Hb_002685_170 Hb_001477_130--Hb_002685_170 Hb_002137_020 Hb_002137_020 Hb_001477_130--Hb_002137_020 Hb_001477_130--Hb_011828_020 Hb_000720_120 Hb_000720_120 Hb_001477_130--Hb_000720_120 Hb_005357_030 Hb_005357_030 Hb_001477_130--Hb_005357_030 Hb_004705_140 Hb_004705_140 Hb_001016_110--Hb_004705_140 Hb_000009_570 Hb_000009_570 Hb_001016_110--Hb_000009_570 Hb_001016_110--Hb_000016_100 Hb_001016_110--Hb_009838_050 Hb_000227_060 Hb_000227_060 Hb_001016_110--Hb_000227_060 Hb_001514_130 Hb_001514_130 Hb_001016_110--Hb_001514_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.575869 0.859816 0.0418867 0.0684291 0.256499 0.826993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.765052 1.10197 0.170784 0.747513 0.188562

CAGE analysis