Hb_021943_030

Information

Type -
Description -
Location Contig21943: 10572-14603
Sequence    

Annotation

kegg
ID tcc:TCM_018243
description DNA/RNA polymerases superfamily protein
nr
ID XP_007032400.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q9P2P1
description Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3
trembl
ID A0A061EEG7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021943_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000048_020 0.2908147351 - - -
3 Hb_000317_360 0.3158249899 - - PREDICTED: GDSL esterase/lipase At5g08460 [Jatropha curcas]
4 Hb_008479_020 0.3254953528 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
5 Hb_009813_080 0.3266823576 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
6 Hb_000359_240 0.3285136354 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
7 Hb_002311_170 0.3297158546 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
8 Hb_062135_010 0.3307486126 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
9 Hb_001085_100 0.3386191312 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_000976_330 0.3414324725 - - hypothetical protein POPTR_0001s05180g [Populus trichocarpa]
11 Hb_014556_020 0.3458035105 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_010320_030 0.3501097076 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
13 Hb_001377_390 0.350130483 - - hypothetical protein POPTR_0002s17390g [Populus trichocarpa]
14 Hb_002046_030 0.3502208889 - - PREDICTED: uncharacterized protein LOC104788746 [Camelina sativa]
15 Hb_015909_010 0.3513594186 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_003052_230 0.3644138299 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001832_020 0.367015589 - - PREDICTED: uncharacterized protein LOC104584029 [Brachypodium distachyon]
18 Hb_000772_060 0.3677926264 - - conserved hypothetical protein [Ricinus communis]
19 Hb_085636_010 0.3798121926 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
20 Hb_000252_140 0.3876509367 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_021943_030 Hb_021943_030 Hb_000048_020 Hb_000048_020 Hb_021943_030--Hb_000048_020 Hb_000317_360 Hb_000317_360 Hb_021943_030--Hb_000317_360 Hb_008479_020 Hb_008479_020 Hb_021943_030--Hb_008479_020 Hb_009813_080 Hb_009813_080 Hb_021943_030--Hb_009813_080 Hb_000359_240 Hb_000359_240 Hb_021943_030--Hb_000359_240 Hb_002311_170 Hb_002311_170 Hb_021943_030--Hb_002311_170 Hb_001232_120 Hb_001232_120 Hb_000048_020--Hb_001232_120 Hb_004525_060 Hb_004525_060 Hb_000048_020--Hb_004525_060 Hb_008289_050 Hb_008289_050 Hb_000048_020--Hb_008289_050 Hb_010288_040 Hb_010288_040 Hb_000048_020--Hb_010288_040 Hb_027472_230 Hb_027472_230 Hb_000048_020--Hb_027472_230 Hb_105328_030 Hb_105328_030 Hb_000317_360--Hb_105328_030 Hb_080147_100 Hb_080147_100 Hb_000317_360--Hb_080147_100 Hb_000645_110 Hb_000645_110 Hb_000317_360--Hb_000645_110 Hb_006420_090 Hb_006420_090 Hb_000317_360--Hb_006420_090 Hb_085636_010 Hb_085636_010 Hb_000317_360--Hb_085636_010 Hb_010320_030 Hb_010320_030 Hb_000317_360--Hb_010320_030 Hb_001085_100 Hb_001085_100 Hb_008479_020--Hb_001085_100 Hb_001832_020 Hb_001832_020 Hb_008479_020--Hb_001832_020 Hb_008479_020--Hb_009813_080 Hb_008479_020--Hb_002311_170 Hb_003052_230 Hb_003052_230 Hb_008479_020--Hb_003052_230 Hb_008479_020--Hb_027472_230 Hb_009813_080--Hb_002311_170 Hb_009813_080--Hb_001085_100 Hb_009813_080--Hb_003052_230 Hb_003960_020 Hb_003960_020 Hb_009813_080--Hb_003960_020 Hb_011077_020 Hb_011077_020 Hb_009813_080--Hb_011077_020 Hb_062135_010 Hb_062135_010 Hb_000359_240--Hb_062135_010 Hb_001377_390 Hb_001377_390 Hb_000359_240--Hb_001377_390 Hb_014556_020 Hb_014556_020 Hb_000359_240--Hb_014556_020 Hb_000252_140 Hb_000252_140 Hb_000359_240--Hb_000252_140 Hb_000359_240--Hb_010320_030 Hb_000359_240--Hb_085636_010 Hb_002311_170--Hb_001085_100 Hb_002311_170--Hb_003960_020 Hb_002311_170--Hb_003052_230 Hb_002311_170--Hb_011077_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00588775 0 0 0 0.00549759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0106274 0 0.00842704 0

CAGE analysis