Hb_105328_030

Information

Type -
Description -
Location Contig105328: 64267-68132
Sequence    

Annotation

kegg
ID brp:103874877
description uncharacterized LOC103874877
nr
ID AAK51582.1
description Putative retroelement [Oryza sativa Japonica Group]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID Q94I07
description Putative retroelement OS=Oryza sativa subsp. japonica GN=OSJNBa0034E23.18 PE=4 SV=1
Gene Ontology
ID GO:0003676
description gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105328_030 0.0 - - Putative retroelement [Oryza sativa Japonica Group]
2 Hb_080147_100 0.17761435 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
3 Hb_001504_120 0.2344247326 - - -
4 Hb_031527_060 0.240665651 - - glutamate decarboxylase, putative [Ricinus communis]
5 Hb_006420_090 0.2428579845 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
6 Hb_000317_360 0.2429549968 - - PREDICTED: GDSL esterase/lipase At5g08460 [Jatropha curcas]
7 Hb_004460_050 0.2453653754 - - chaperone protein DNAj, putative [Ricinus communis]
8 Hb_000300_130 0.2544675691 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
9 Hb_003435_060 0.2593512086 - - carbonic anhydrase, putative [Ricinus communis]
10 Hb_000645_210 0.2620607574 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
11 Hb_000297_020 0.2665911753 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
12 Hb_003750_030 0.2671956361 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
13 Hb_031862_040 0.2672437458 - - purine transporter, putative [Ricinus communis]
14 Hb_007153_040 0.2680208954 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
15 Hb_008014_030 0.2715764593 - - Aquaporin NIP1.1, putative [Ricinus communis]
16 Hb_015690_010 0.2728175488 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g038521mg [Citrus sinensis]
17 Hb_000061_090 0.2739439985 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
18 Hb_002805_020 0.2753455693 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
19 Hb_001206_090 0.2777660796 - - pyruvate decarboxylase [Hevea brasiliensis]
20 Hb_000805_320 0.2803688536 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]

Gene co-expression network

sample Hb_105328_030 Hb_105328_030 Hb_080147_100 Hb_080147_100 Hb_105328_030--Hb_080147_100 Hb_001504_120 Hb_001504_120 Hb_105328_030--Hb_001504_120 Hb_031527_060 Hb_031527_060 Hb_105328_030--Hb_031527_060 Hb_006420_090 Hb_006420_090 Hb_105328_030--Hb_006420_090 Hb_000317_360 Hb_000317_360 Hb_105328_030--Hb_000317_360 Hb_004460_050 Hb_004460_050 Hb_105328_030--Hb_004460_050 Hb_000805_320 Hb_000805_320 Hb_080147_100--Hb_000805_320 Hb_003073_180 Hb_003073_180 Hb_080147_100--Hb_003073_180 Hb_094437_060 Hb_094437_060 Hb_080147_100--Hb_094437_060 Hb_080147_100--Hb_001504_120 Hb_003750_030 Hb_003750_030 Hb_080147_100--Hb_003750_030 Hb_138585_110 Hb_138585_110 Hb_001504_120--Hb_138585_110 Hb_000796_250 Hb_000796_250 Hb_001504_120--Hb_000796_250 Hb_001433_180 Hb_001433_180 Hb_001504_120--Hb_001433_180 Hb_001504_120--Hb_000805_320 Hb_002236_050 Hb_002236_050 Hb_001504_120--Hb_002236_050 Hb_009545_020 Hb_009545_020 Hb_031527_060--Hb_009545_020 Hb_000645_210 Hb_000645_210 Hb_031527_060--Hb_000645_210 Hb_009736_010 Hb_009736_010 Hb_031527_060--Hb_009736_010 Hb_000928_040 Hb_000928_040 Hb_031527_060--Hb_000928_040 Hb_000300_130 Hb_000300_130 Hb_031527_060--Hb_000300_130 Hb_003120_040 Hb_003120_040 Hb_031527_060--Hb_003120_040 Hb_007101_290 Hb_007101_290 Hb_006420_090--Hb_007101_290 Hb_026527_020 Hb_026527_020 Hb_006420_090--Hb_026527_020 Hb_007317_080 Hb_007317_080 Hb_006420_090--Hb_007317_080 Hb_006420_090--Hb_000300_130 Hb_000836_490 Hb_000836_490 Hb_006420_090--Hb_000836_490 Hb_000317_360--Hb_080147_100 Hb_000645_110 Hb_000645_110 Hb_000317_360--Hb_000645_110 Hb_000317_360--Hb_006420_090 Hb_085636_010 Hb_085636_010 Hb_000317_360--Hb_085636_010 Hb_010320_030 Hb_010320_030 Hb_000317_360--Hb_010320_030 Hb_000868_100 Hb_000868_100 Hb_004460_050--Hb_000868_100 Hb_000160_240 Hb_000160_240 Hb_004460_050--Hb_000160_240 Hb_000260_290 Hb_000260_290 Hb_004460_050--Hb_000260_290 Hb_000694_060 Hb_000694_060 Hb_004460_050--Hb_000694_060 Hb_004460_050--Hb_031527_060 Hb_001117_070 Hb_001117_070 Hb_004460_050--Hb_001117_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0124464 0.150217 0 0.0271051 0.0156229 0.0501287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0378394 0.238221 0.0951327 0.44848 0.0424511

CAGE analysis