Hb_085636_010

Information

Type -
Description -
Location Contig85636: 349-741
Sequence    

Annotation

kegg
ID sly:104647816
description uncharacterized LOC104647816
nr
ID XP_012075355.1
description PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0NNN8
description Endogenous retrovirus group K, member 6 OS=Gossypium arboreum GN=F383_04282 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085636_010 0.0 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
2 Hb_010320_030 0.0695871845 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_000359_240 0.2450231258 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
4 Hb_062135_010 0.2480891025 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
5 Hb_000317_360 0.2727126328 - - PREDICTED: GDSL esterase/lipase At5g08460 [Jatropha curcas]
6 Hb_000496_090 0.2787400569 - - PREDICTED: inhibitor of trypsin and hageman factor-like [Gossypium raimondii]
7 Hb_001369_280 0.2825570513 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like isoform X3 [Solanum tuberosum]
8 Hb_001995_020 0.2871001596 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
9 Hb_036790_010 0.2896619098 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
10 Hb_022137_030 0.3144383549 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
11 Hb_002740_020 0.3188930608 - - -
12 Hb_115472_010 0.3214468191 - - -
13 Hb_001268_130 0.3224003089 - - hypothetical protein JCGZ_26837 [Jatropha curcas]
14 Hb_172503_010 0.3296853118 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
15 Hb_103832_030 0.3301332563 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
16 Hb_083103_030 0.3323044658 - - putative retrotransposon protein [Malus domestica]
17 Hb_006355_030 0.3337381432 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
18 Hb_014556_020 0.3391095407 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_001377_390 0.3488528152 - - hypothetical protein POPTR_0002s17390g [Populus trichocarpa]
20 Hb_007520_040 0.3533559151 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_085636_010 Hb_085636_010 Hb_010320_030 Hb_010320_030 Hb_085636_010--Hb_010320_030 Hb_000359_240 Hb_000359_240 Hb_085636_010--Hb_000359_240 Hb_062135_010 Hb_062135_010 Hb_085636_010--Hb_062135_010 Hb_000317_360 Hb_000317_360 Hb_085636_010--Hb_000317_360 Hb_000496_090 Hb_000496_090 Hb_085636_010--Hb_000496_090 Hb_001369_280 Hb_001369_280 Hb_085636_010--Hb_001369_280 Hb_010320_030--Hb_000359_240 Hb_010320_030--Hb_062135_010 Hb_014556_020 Hb_014556_020 Hb_010320_030--Hb_014556_020 Hb_010320_030--Hb_000317_360 Hb_001377_390 Hb_001377_390 Hb_010320_030--Hb_001377_390 Hb_000359_240--Hb_062135_010 Hb_000359_240--Hb_001377_390 Hb_000359_240--Hb_014556_020 Hb_000252_140 Hb_000252_140 Hb_000359_240--Hb_000252_140 Hb_062135_010--Hb_001377_390 Hb_062135_010--Hb_014556_020 Hb_062135_010--Hb_000252_140 Hb_105328_030 Hb_105328_030 Hb_000317_360--Hb_105328_030 Hb_080147_100 Hb_080147_100 Hb_000317_360--Hb_080147_100 Hb_000645_110 Hb_000645_110 Hb_000317_360--Hb_000645_110 Hb_006420_090 Hb_006420_090 Hb_000317_360--Hb_006420_090 Hb_000496_090--Hb_001369_280 Hb_036790_010 Hb_036790_010 Hb_000496_090--Hb_036790_010 Hb_022137_030 Hb_022137_030 Hb_000496_090--Hb_022137_030 Hb_002740_020 Hb_002740_020 Hb_000496_090--Hb_002740_020 Hb_115472_010 Hb_115472_010 Hb_000496_090--Hb_115472_010 Hb_172503_010 Hb_172503_010 Hb_000496_090--Hb_172503_010 Hb_001369_280--Hb_036790_010 Hb_001369_280--Hb_022137_030 Hb_001369_280--Hb_002740_020 Hb_001369_280--Hb_115472_010 Hb_001369_280--Hb_172503_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0793067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.161969 0 0.348238 0

CAGE analysis