Hb_001377_390

Information

Type -
Description -
Location Contig1377: 374476-376183
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17390g
description hypothetical protein
nr
ID XP_002302639.2
description hypothetical protein POPTR_0002s17390g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GR29
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s17390g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_390 0.0 - - hypothetical protein POPTR_0002s17390g [Populus trichocarpa]
2 Hb_014556_020 0.0326470936 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000252_140 0.1162599787 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000359_240 0.1162893516 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
5 Hb_062135_010 0.1199786091 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
6 Hb_003554_020 0.2243282649 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
7 Hb_010320_030 0.2817886947 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
8 Hb_002641_110 0.2938970369 - - PREDICTED: uncharacterized protein LOC103448574 [Malus domestica]
9 Hb_000025_130 0.3121592542 - - -
10 Hb_000173_300 0.3281274387 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
11 Hb_026113_020 0.3290506561 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_006684_020 0.3293799668 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_000529_120 0.3297657705 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
14 Hb_000976_220 0.3307257191 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
15 Hb_127120_010 0.330733074 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
16 Hb_007407_030 0.330760317 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
17 Hb_007426_240 0.3329883781 - - -
18 Hb_000092_210 0.3429077607 - - -
19 Hb_005063_070 0.3437245381 - - PREDICTED: PRA1 family protein E [Jatropha curcas]
20 Hb_069868_010 0.3461921431 - - hypothetical protein JCGZ_14833 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_390 Hb_001377_390 Hb_014556_020 Hb_014556_020 Hb_001377_390--Hb_014556_020 Hb_000252_140 Hb_000252_140 Hb_001377_390--Hb_000252_140 Hb_000359_240 Hb_000359_240 Hb_001377_390--Hb_000359_240 Hb_062135_010 Hb_062135_010 Hb_001377_390--Hb_062135_010 Hb_003554_020 Hb_003554_020 Hb_001377_390--Hb_003554_020 Hb_010320_030 Hb_010320_030 Hb_001377_390--Hb_010320_030 Hb_014556_020--Hb_000359_240 Hb_014556_020--Hb_062135_010 Hb_014556_020--Hb_000252_140 Hb_014556_020--Hb_003554_020 Hb_014556_020--Hb_010320_030 Hb_000252_140--Hb_062135_010 Hb_000252_140--Hb_000359_240 Hb_069868_010 Hb_069868_010 Hb_000252_140--Hb_069868_010 Hb_000252_140--Hb_003554_020 Hb_000359_240--Hb_062135_010 Hb_000359_240--Hb_010320_030 Hb_085636_010 Hb_085636_010 Hb_000359_240--Hb_085636_010 Hb_062135_010--Hb_010320_030 Hb_062135_010--Hb_085636_010 Hb_156635_050 Hb_156635_050 Hb_003554_020--Hb_156635_050 Hb_003554_020--Hb_000359_240 Hb_003554_020--Hb_062135_010 Hb_010320_030--Hb_085636_010 Hb_000317_360 Hb_000317_360 Hb_010320_030--Hb_000317_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0274411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0436601 0 0.0175905 0

CAGE analysis