Hb_014556_020

Information

Type -
Description -
Location Contig14556: 4113-6839
Sequence    

Annotation

kegg
ID tcc:TCM_003025
description DNA/RNA polymerases superfamily protein
nr
ID XP_007049837.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061DME7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003025 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014556_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_001377_390 0.0326470936 - - hypothetical protein POPTR_0002s17390g [Populus trichocarpa]
3 Hb_000359_240 0.1196401264 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
4 Hb_062135_010 0.1264287205 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
5 Hb_000252_140 0.148579355 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_003554_020 0.2280747329 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
7 Hb_010320_030 0.2722877018 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
8 Hb_002641_110 0.2865161898 - - PREDICTED: uncharacterized protein LOC103448574 [Malus domestica]
9 Hb_000025_130 0.329310937 - - -
10 Hb_026113_020 0.3342203162 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_006684_020 0.3342472046 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_000173_300 0.3343276037 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
13 Hb_000976_220 0.334544434 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
14 Hb_127120_010 0.334546664 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
15 Hb_007407_030 0.3345549696 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
16 Hb_085636_010 0.3391095407 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
17 Hb_000529_120 0.3423380542 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
18 Hb_021943_030 0.3458035105 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_007426_240 0.3473925095 - - -
20 Hb_010803_010 0.3526565121 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_014556_020 Hb_014556_020 Hb_001377_390 Hb_001377_390 Hb_014556_020--Hb_001377_390 Hb_000359_240 Hb_000359_240 Hb_014556_020--Hb_000359_240 Hb_062135_010 Hb_062135_010 Hb_014556_020--Hb_062135_010 Hb_000252_140 Hb_000252_140 Hb_014556_020--Hb_000252_140 Hb_003554_020 Hb_003554_020 Hb_014556_020--Hb_003554_020 Hb_010320_030 Hb_010320_030 Hb_014556_020--Hb_010320_030 Hb_001377_390--Hb_000252_140 Hb_001377_390--Hb_000359_240 Hb_001377_390--Hb_062135_010 Hb_001377_390--Hb_003554_020 Hb_001377_390--Hb_010320_030 Hb_000359_240--Hb_062135_010 Hb_000359_240--Hb_000252_140 Hb_000359_240--Hb_010320_030 Hb_085636_010 Hb_085636_010 Hb_000359_240--Hb_085636_010 Hb_062135_010--Hb_000252_140 Hb_062135_010--Hb_010320_030 Hb_062135_010--Hb_085636_010 Hb_069868_010 Hb_069868_010 Hb_000252_140--Hb_069868_010 Hb_000252_140--Hb_003554_020 Hb_156635_050 Hb_156635_050 Hb_003554_020--Hb_156635_050 Hb_003554_020--Hb_000359_240 Hb_003554_020--Hb_062135_010 Hb_010320_030--Hb_085636_010 Hb_000317_360 Hb_000317_360 Hb_010320_030--Hb_000317_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00775898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0146738 0 0.0058292 0

CAGE analysis