Hb_000252_140

Information

Type -
Description -
Location Contig252: 109702-114141
Sequence    

Annotation

kegg
ID rcu:RCOM_0024500
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.25)
nr
ID XP_002527912.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID F4IB81
description LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3 PE=2 SV=1
trembl
ID B9SPJ3
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0024500 PE=3 SV=1
Gene Ontology
ID GO:0004672
description lysm domain receptor-like kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_140 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_001377_390 0.1162599787 - - hypothetical protein POPTR_0002s17390g [Populus trichocarpa]
3 Hb_014556_020 0.148579355 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_062135_010 0.1675642569 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
5 Hb_000359_240 0.1731266884 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
6 Hb_069868_010 0.2332466003 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
7 Hb_003554_020 0.2441268982 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
8 Hb_000025_130 0.2718002942 - - -
9 Hb_000092_210 0.2909550742 - - -
10 Hb_023813_010 0.2915032605 - - PREDICTED: uncharacterized protein LOC105162193 [Sesamum indicum]
11 Hb_012094_030 0.2927640788 - - PREDICTED: uncharacterized protein LOC103699727 [Phoenix dactylifera]
12 Hb_009722_020 0.2928237499 - - -
13 Hb_007426_240 0.2952699538 - - -
14 Hb_002046_030 0.2977191611 - - PREDICTED: uncharacterized protein LOC104788746 [Camelina sativa]
15 Hb_000529_120 0.2996374696 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
16 Hb_008202_030 0.311881759 - - hypothetical protein B456_002G115600 [Gossypium raimondii]
17 Hb_000800_100 0.3171906755 - - hypothetical protein JCGZ_01543 [Jatropha curcas]
18 Hb_005063_070 0.3184277148 - - PREDICTED: PRA1 family protein E [Jatropha curcas]
19 Hb_000173_300 0.3221893783 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
20 Hb_157340_010 0.3236328944 - - hypothetical protein CISIN_1g0109951mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000252_140 Hb_000252_140 Hb_001377_390 Hb_001377_390 Hb_000252_140--Hb_001377_390 Hb_014556_020 Hb_014556_020 Hb_000252_140--Hb_014556_020 Hb_062135_010 Hb_062135_010 Hb_000252_140--Hb_062135_010 Hb_000359_240 Hb_000359_240 Hb_000252_140--Hb_000359_240 Hb_069868_010 Hb_069868_010 Hb_000252_140--Hb_069868_010 Hb_003554_020 Hb_003554_020 Hb_000252_140--Hb_003554_020 Hb_001377_390--Hb_014556_020 Hb_001377_390--Hb_000359_240 Hb_001377_390--Hb_062135_010 Hb_001377_390--Hb_003554_020 Hb_010320_030 Hb_010320_030 Hb_001377_390--Hb_010320_030 Hb_014556_020--Hb_000359_240 Hb_014556_020--Hb_062135_010 Hb_014556_020--Hb_003554_020 Hb_014556_020--Hb_010320_030 Hb_062135_010--Hb_000359_240 Hb_062135_010--Hb_010320_030 Hb_085636_010 Hb_085636_010 Hb_062135_010--Hb_085636_010 Hb_000359_240--Hb_010320_030 Hb_000359_240--Hb_085636_010 Hb_003621_010 Hb_003621_010 Hb_069868_010--Hb_003621_010 Hb_000800_100 Hb_000800_100 Hb_069868_010--Hb_000800_100 Hb_008202_030 Hb_008202_030 Hb_069868_010--Hb_008202_030 Hb_157340_010 Hb_157340_010 Hb_069868_010--Hb_157340_010 Hb_002046_030 Hb_002046_030 Hb_069868_010--Hb_002046_030 Hb_156635_050 Hb_156635_050 Hb_003554_020--Hb_156635_050 Hb_003554_020--Hb_000359_240 Hb_003554_020--Hb_062135_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0252166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0227857 0 0.00908729 0

CAGE analysis