Hb_000645_110

Information

Type transcription factor
Description TF Family: GRAS
Location Contig645: 92879-94639
Sequence    

Annotation

kegg
ID rcu:RCOM_1000320
description DELLA protein RGL1, putative
nr
ID XP_012084259.1
description PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
swissprot
ID Q9C8Y3
description DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1
trembl
ID A0A067K7Y3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19009 PE=4 SV=1
Gene Ontology
ID GO:0006351
description della protein rgl1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_110 0.0 transcription factor TF Family: GRAS PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
2 Hb_003073_180 0.2223938172 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
3 Hb_080147_100 0.2305973428 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
4 Hb_140049_050 0.2552045226 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
5 Hb_000209_110 0.2576019316 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
6 Hb_000317_360 0.2590370765 - - PREDICTED: GDSL esterase/lipase At5g08460 [Jatropha curcas]
7 Hb_000157_130 0.2769037653 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X2 [Populus euphratica]
8 Hb_105328_030 0.2821221414 - - Putative retroelement [Oryza sativa Japonica Group]
9 Hb_002407_080 0.2830670768 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
10 Hb_004668_100 0.2833280271 - - -
11 Hb_010334_020 0.2871800319 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Sesamum indicum]
12 Hb_005288_040 0.2970313068 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
13 Hb_001504_120 0.2975638707 - - -
14 Hb_000805_320 0.3026059532 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
15 Hb_024621_030 0.3051931961 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
16 Hb_138585_110 0.3073958972 - - -
17 Hb_113250_010 0.3105670391 - - -
18 Hb_012754_040 0.3110819309 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
19 Hb_004462_010 0.313957212 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
20 Hb_000976_330 0.3140055192 - - hypothetical protein POPTR_0001s05180g [Populus trichocarpa]

Gene co-expression network

sample Hb_000645_110 Hb_000645_110 Hb_003073_180 Hb_003073_180 Hb_000645_110--Hb_003073_180 Hb_080147_100 Hb_080147_100 Hb_000645_110--Hb_080147_100 Hb_140049_050 Hb_140049_050 Hb_000645_110--Hb_140049_050 Hb_000209_110 Hb_000209_110 Hb_000645_110--Hb_000209_110 Hb_000317_360 Hb_000317_360 Hb_000645_110--Hb_000317_360 Hb_000157_130 Hb_000157_130 Hb_000645_110--Hb_000157_130 Hb_002407_080 Hb_002407_080 Hb_003073_180--Hb_002407_080 Hb_000805_320 Hb_000805_320 Hb_003073_180--Hb_000805_320 Hb_003073_180--Hb_000209_110 Hb_001258_060 Hb_001258_060 Hb_003073_180--Hb_001258_060 Hb_003073_180--Hb_080147_100 Hb_006586_030 Hb_006586_030 Hb_003073_180--Hb_006586_030 Hb_080147_100--Hb_000805_320 Hb_105328_030 Hb_105328_030 Hb_080147_100--Hb_105328_030 Hb_094437_060 Hb_094437_060 Hb_080147_100--Hb_094437_060 Hb_001504_120 Hb_001504_120 Hb_080147_100--Hb_001504_120 Hb_003750_030 Hb_003750_030 Hb_080147_100--Hb_003750_030 Hb_001565_110 Hb_001565_110 Hb_140049_050--Hb_001565_110 Hb_001433_180 Hb_001433_180 Hb_140049_050--Hb_001433_180 Hb_007382_050 Hb_007382_050 Hb_140049_050--Hb_007382_050 Hb_000067_010 Hb_000067_010 Hb_140049_050--Hb_000067_010 Hb_010334_020 Hb_010334_020 Hb_140049_050--Hb_010334_020 Hb_000544_100 Hb_000544_100 Hb_000209_110--Hb_000544_100 Hb_000209_110--Hb_006586_030 Hb_000093_150 Hb_000093_150 Hb_000209_110--Hb_000093_150 Hb_004462_010 Hb_004462_010 Hb_000209_110--Hb_004462_010 Hb_000209_110--Hb_002407_080 Hb_000317_360--Hb_105328_030 Hb_000317_360--Hb_080147_100 Hb_006420_090 Hb_006420_090 Hb_000317_360--Hb_006420_090 Hb_085636_010 Hb_085636_010 Hb_000317_360--Hb_085636_010 Hb_010320_030 Hb_010320_030 Hb_000317_360--Hb_010320_030 Hb_000157_130--Hb_003073_180 Hb_000157_130--Hb_080147_100 Hb_001390_030 Hb_001390_030 Hb_000157_130--Hb_001390_030 Hb_003813_120 Hb_003813_120 Hb_000157_130--Hb_003813_120 Hb_000157_130--Hb_000805_320 Hb_004976_050 Hb_004976_050 Hb_000157_130--Hb_004976_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11358 0.3537 0 0.00824725 0.155895 0.610023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.208138 0.552692 0.270719 3.10691 0

CAGE analysis