Hb_000067_010

Information

Type -
Description -
Location Contig67: 12911-23581
Sequence    

Annotation

kegg
ID egr:104445029
description zinc-metallopeptidase, peroxisomal-like
nr
ID KJB14881.1
description hypothetical protein B456_002G147500 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2QD47
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G147500 PE=4 SV=1
Gene Ontology
ID GO:0003824
description zinc- peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53394: 17003-17126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000067_010 0.0 - - hypothetical protein B456_002G147500 [Gossypium raimondii]
2 Hb_000093_150 0.2203414098 - - 6-phosphogluconolactonase, putative [Ricinus communis]
3 Hb_001946_030 0.2246902589 - - grr1, plant, putative [Ricinus communis]
4 Hb_096811_010 0.2420095673 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At1g61190 [Vitis vinifera]
5 Hb_000928_040 0.2474617241 - - cytochrome P450, putative [Ricinus communis]
6 Hb_002043_010 0.2552584519 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_140049_050 0.2563154119 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
8 Hb_000483_110 0.2591184158 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 2, partial [Theobroma cacao]
9 Hb_003835_040 0.259135985 - - PREDICTED: UDP-glycosyltransferase 91A1-like [Jatropha curcas]
10 Hb_004462_010 0.2617841011 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
11 Hb_000733_210 0.2653352489 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
12 Hb_002110_260 0.2653601252 - - zinc finger protein, putative [Ricinus communis]
13 Hb_001565_110 0.2656697514 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
14 Hb_028811_010 0.2672549427 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
15 Hb_043485_010 0.2674048829 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X2 [Jatropha curcas]
16 Hb_039145_010 0.267851662 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
17 Hb_005896_010 0.2680756313 - - -
18 Hb_000108_170 0.2682922757 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
19 Hb_006683_030 0.2686083159 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
20 Hb_001524_090 0.2719680057 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]

Gene co-expression network

sample Hb_000067_010 Hb_000067_010 Hb_000093_150 Hb_000093_150 Hb_000067_010--Hb_000093_150 Hb_001946_030 Hb_001946_030 Hb_000067_010--Hb_001946_030 Hb_096811_010 Hb_096811_010 Hb_000067_010--Hb_096811_010 Hb_000928_040 Hb_000928_040 Hb_000067_010--Hb_000928_040 Hb_002043_010 Hb_002043_010 Hb_000067_010--Hb_002043_010 Hb_140049_050 Hb_140049_050 Hb_000067_010--Hb_140049_050 Hb_000093_150--Hb_000928_040 Hb_127886_010 Hb_127886_010 Hb_000093_150--Hb_127886_010 Hb_000645_210 Hb_000645_210 Hb_000093_150--Hb_000645_210 Hb_004462_010 Hb_004462_010 Hb_000093_150--Hb_004462_010 Hb_003517_020 Hb_003517_020 Hb_000093_150--Hb_003517_020 Hb_002304_140 Hb_002304_140 Hb_000093_150--Hb_002304_140 Hb_000005_250 Hb_000005_250 Hb_001946_030--Hb_000005_250 Hb_028811_010 Hb_028811_010 Hb_001946_030--Hb_028811_010 Hb_183623_010 Hb_183623_010 Hb_001946_030--Hb_183623_010 Hb_001206_090 Hb_001206_090 Hb_001946_030--Hb_001206_090 Hb_001623_160 Hb_001623_160 Hb_001946_030--Hb_001623_160 Hb_004079_080 Hb_004079_080 Hb_001946_030--Hb_004079_080 Hb_096811_010--Hb_000093_150 Hb_012553_020 Hb_012553_020 Hb_096811_010--Hb_012553_020 Hb_019893_010 Hb_019893_010 Hb_096811_010--Hb_019893_010 Hb_000077_330 Hb_000077_330 Hb_096811_010--Hb_000077_330 Hb_000343_100 Hb_000343_100 Hb_096811_010--Hb_000343_100 Hb_008749_090 Hb_008749_090 Hb_096811_010--Hb_008749_090 Hb_000928_040--Hb_000645_210 Hb_003576_050 Hb_003576_050 Hb_000928_040--Hb_003576_050 Hb_000928_040--Hb_003517_020 Hb_000367_310 Hb_000367_310 Hb_000928_040--Hb_000367_310 Hb_007919_040 Hb_007919_040 Hb_000928_040--Hb_007919_040 Hb_002110_260 Hb_002110_260 Hb_002043_010--Hb_002110_260 Hb_012565_080 Hb_012565_080 Hb_002043_010--Hb_012565_080 Hb_000384_050 Hb_000384_050 Hb_002043_010--Hb_000384_050 Hb_002524_030 Hb_002524_030 Hb_002043_010--Hb_002524_030 Hb_002827_020 Hb_002827_020 Hb_002043_010--Hb_002827_020 Hb_000036_050 Hb_000036_050 Hb_002043_010--Hb_000036_050 Hb_001565_110 Hb_001565_110 Hb_140049_050--Hb_001565_110 Hb_001433_180 Hb_001433_180 Hb_140049_050--Hb_001433_180 Hb_007382_050 Hb_007382_050 Hb_140049_050--Hb_007382_050 Hb_000645_110 Hb_000645_110 Hb_140049_050--Hb_000645_110 Hb_010334_020 Hb_010334_020 Hb_140049_050--Hb_010334_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.182812 0.693037 0 0.108394 0.0500812 0.25185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.155461 0.0305729 0.62674 1.64005 0.126793

CAGE analysis