Hb_002110_260

Information

Type -
Description -
Location Contig2110: 213932-215209
Sequence    

Annotation

kegg
ID rcu:RCOM_1037890
description zinc finger protein, putative
nr
ID XP_002513986.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q84W40
description RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2 SV=2
trembl
ID B9RJR7
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1037890 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ring-h2 finger protein atl11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_260 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_002043_010 0.144630595 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_000384_050 0.159374393 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
4 Hb_001946_150 0.1969490357 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012565_080 0.1970713414 - - serine/threonine kinase, putative [Ricinus communis]
6 Hb_000645_210 0.1998042795 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]
7 Hb_000928_040 0.2043287469 - - cytochrome P450, putative [Ricinus communis]
8 Hb_011618_040 0.2190793398 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007416_150 0.2218232712 - - sarcosine oxidase, putative [Ricinus communis]
10 Hb_000556_110 0.2223039947 - - hypothetical protein POPTR_0014s06790g [Populus trichocarpa]
11 Hb_006586_030 0.2224364311 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
12 Hb_002827_020 0.2232400712 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
13 Hb_002903_130 0.2255739593 - - epoxide hydrolase, putative [Ricinus communis]
14 Hb_002273_080 0.2322738582 - - geranylgeranyl reductase [Monoraphidium neglectum]
15 Hb_003517_020 0.2335779787 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
16 Hb_000093_150 0.2374334952 - - 6-phosphogluconolactonase, putative [Ricinus communis]
17 Hb_001248_030 0.2394191037 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_001635_050 0.239567749 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nicotiana sylvestris]
19 Hb_000097_040 0.2412956141 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
20 Hb_000343_100 0.2413789719 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002110_260 Hb_002110_260 Hb_002043_010 Hb_002043_010 Hb_002110_260--Hb_002043_010 Hb_000384_050 Hb_000384_050 Hb_002110_260--Hb_000384_050 Hb_001946_150 Hb_001946_150 Hb_002110_260--Hb_001946_150 Hb_012565_080 Hb_012565_080 Hb_002110_260--Hb_012565_080 Hb_000645_210 Hb_000645_210 Hb_002110_260--Hb_000645_210 Hb_000928_040 Hb_000928_040 Hb_002110_260--Hb_000928_040 Hb_002043_010--Hb_012565_080 Hb_002043_010--Hb_000384_050 Hb_002524_030 Hb_002524_030 Hb_002043_010--Hb_002524_030 Hb_002827_020 Hb_002827_020 Hb_002043_010--Hb_002827_020 Hb_000036_050 Hb_000036_050 Hb_002043_010--Hb_000036_050 Hb_000343_100 Hb_000343_100 Hb_000384_050--Hb_000343_100 Hb_003517_020 Hb_003517_020 Hb_000384_050--Hb_003517_020 Hb_000384_050--Hb_012565_080 Hb_102011_010 Hb_102011_010 Hb_000384_050--Hb_102011_010 Hb_002903_130 Hb_002903_130 Hb_001946_150--Hb_002903_130 Hb_000362_110 Hb_000362_110 Hb_001946_150--Hb_000362_110 Hb_000313_370 Hb_000313_370 Hb_001946_150--Hb_000313_370 Hb_000866_090 Hb_000866_090 Hb_001946_150--Hb_000866_090 Hb_000645_240 Hb_000645_240 Hb_001946_150--Hb_000645_240 Hb_001799_190 Hb_001799_190 Hb_001946_150--Hb_001799_190 Hb_000789_240 Hb_000789_240 Hb_012565_080--Hb_000789_240 Hb_020178_060 Hb_020178_060 Hb_012565_080--Hb_020178_060 Hb_001416_020 Hb_001416_020 Hb_012565_080--Hb_001416_020 Hb_012565_080--Hb_002827_020 Hb_000283_150 Hb_000283_150 Hb_012565_080--Hb_000283_150 Hb_002016_040 Hb_002016_040 Hb_012565_080--Hb_002016_040 Hb_000645_210--Hb_000928_040 Hb_127886_010 Hb_127886_010 Hb_000645_210--Hb_127886_010 Hb_001206_090 Hb_001206_090 Hb_000645_210--Hb_001206_090 Hb_031527_060 Hb_031527_060 Hb_000645_210--Hb_031527_060 Hb_001114_070 Hb_001114_070 Hb_000645_210--Hb_001114_070 Hb_000093_150 Hb_000093_150 Hb_000645_210--Hb_000093_150 Hb_003576_050 Hb_003576_050 Hb_000928_040--Hb_003576_050 Hb_000928_040--Hb_003517_020 Hb_000367_310 Hb_000367_310 Hb_000928_040--Hb_000367_310 Hb_007919_040 Hb_007919_040 Hb_000928_040--Hb_007919_040 Hb_000928_040--Hb_000093_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.193593 1.47438 0.0123007 0.141723 0.430179 0.264223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.150571 0.207282 0.16577 2.6186 0.245962

CAGE analysis