Hb_001565_110

Information

Type -
Description -
Location Contig1565: 109005-115393
Sequence    

Annotation

kegg
ID rcu:RCOM_1049340
description multidrug resistance protein 1, 2, putative (EC:3.6.3.44)
nr
ID XP_012076854.1
description PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
swissprot
ID Q9LHK4
description Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1
trembl
ID B9RKG7
description Multidrug resistance protein 1, 2, putative OS=Ricinus communis GN=RCOM_1049340 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter b family member 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13613: 114111-114500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001565_110 0.0 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
2 Hb_000260_290 0.1837588335 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
3 Hb_000025_430 0.1975039309 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
4 Hb_013766_010 0.2125627302 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
5 Hb_082182_010 0.2154534984 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
6 Hb_005439_040 0.2228246771 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
7 Hb_140049_050 0.2229570969 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
8 Hb_001433_180 0.2244761328 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
9 Hb_000796_250 0.2325488997 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
10 Hb_003052_220 0.2336441292 - - -
11 Hb_001619_080 0.2362642425 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007747_140 0.2394238644 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
13 Hb_003609_020 0.2401104849 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]
14 Hb_024468_020 0.2419379983 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
15 Hb_000005_250 0.242005282 - - conserved hypothetical protein [Ricinus communis]
16 Hb_043485_010 0.2421029059 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X2 [Jatropha curcas]
17 Hb_138585_110 0.2460047068 - - -
18 Hb_031862_040 0.2477880254 - - purine transporter, putative [Ricinus communis]
19 Hb_002301_390 0.2522533241 - - -
20 Hb_002486_010 0.2537678127 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001565_110 Hb_001565_110 Hb_000260_290 Hb_000260_290 Hb_001565_110--Hb_000260_290 Hb_000025_430 Hb_000025_430 Hb_001565_110--Hb_000025_430 Hb_013766_010 Hb_013766_010 Hb_001565_110--Hb_013766_010 Hb_082182_010 Hb_082182_010 Hb_001565_110--Hb_082182_010 Hb_005439_040 Hb_005439_040 Hb_001565_110--Hb_005439_040 Hb_140049_050 Hb_140049_050 Hb_001565_110--Hb_140049_050 Hb_000796_250 Hb_000796_250 Hb_000260_290--Hb_000796_250 Hb_015690_020 Hb_015690_020 Hb_000260_290--Hb_015690_020 Hb_001433_180 Hb_001433_180 Hb_000260_290--Hb_001433_180 Hb_003052_220 Hb_003052_220 Hb_000260_290--Hb_003052_220 Hb_031862_040 Hb_031862_040 Hb_000260_290--Hb_031862_040 Hb_002301_390 Hb_002301_390 Hb_000025_430--Hb_002301_390 Hb_078001_010 Hb_078001_010 Hb_000025_430--Hb_078001_010 Hb_000005_250 Hb_000005_250 Hb_000025_430--Hb_000005_250 Hb_094437_060 Hb_094437_060 Hb_000025_430--Hb_094437_060 Hb_004800_170 Hb_004800_170 Hb_000025_430--Hb_004800_170 Hb_002486_010 Hb_002486_010 Hb_013766_010--Hb_002486_010 Hb_007747_180 Hb_007747_180 Hb_013766_010--Hb_007747_180 Hb_001079_020 Hb_001079_020 Hb_013766_010--Hb_001079_020 Hb_002253_060 Hb_002253_060 Hb_013766_010--Hb_002253_060 Hb_013766_010--Hb_082182_010 Hb_082182_010--Hb_005439_040 Hb_082182_010--Hb_007747_180 Hb_082182_010--Hb_002486_010 Hb_043485_010 Hb_043485_010 Hb_082182_010--Hb_043485_010 Hb_082182_010--Hb_015690_020 Hb_024468_020 Hb_024468_020 Hb_082182_010--Hb_024468_020 Hb_005439_040--Hb_002486_010 Hb_005439_040--Hb_043485_010 Hb_000500_140 Hb_000500_140 Hb_005439_040--Hb_000500_140 Hb_007747_140 Hb_007747_140 Hb_005439_040--Hb_007747_140 Hb_140049_050--Hb_001433_180 Hb_007382_050 Hb_007382_050 Hb_140049_050--Hb_007382_050 Hb_000645_110 Hb_000645_110 Hb_140049_050--Hb_000645_110 Hb_000067_010 Hb_000067_010 Hb_140049_050--Hb_000067_010 Hb_010334_020 Hb_010334_020 Hb_140049_050--Hb_010334_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.704629 2.18503 0.0303718 0.0997333 0.291453 0.412446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84953 1.2726 3.21048 4.95718 0.0852966

CAGE analysis