Hb_078001_010

Information

Type -
Description -
Location Contig78001: 248-948
Sequence    

Annotation

kegg
ID tcc:TCM_000398
description hypothetical protein
nr
ID XP_007046953.1
description Uncharacterized protein TCM_000398 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DFT5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_000398 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078001_010 0.0 - - Uncharacterized protein TCM_000398 [Theobroma cacao]
2 Hb_000025_430 0.2388747276 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
3 Hb_005439_040 0.2662787496 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
4 Hb_003835_050 0.2838405869 - - Anthocyanidin 3-O-glucosyltransferase [Medicago truncatula]
5 Hb_011316_120 0.2920082802 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
6 Hb_001946_030 0.2940452306 - - grr1, plant, putative [Ricinus communis]
7 Hb_155384_010 0.2984179845 - - -
8 Hb_001565_110 0.3088119338 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
9 Hb_000005_250 0.3093394107 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000050_130 0.3167785223 - - Putative Pol polyprotein from transposon element Bs1 [Triticum urartu]
11 Hb_007747_140 0.3203001765 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
12 Hb_002486_010 0.3208604276 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
13 Hb_082182_010 0.3263386604 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
14 Hb_000077_060 0.3269597881 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
15 Hb_000067_010 0.3285938327 - - hypothetical protein B456_002G147500 [Gossypium raimondii]
16 Hb_000414_110 0.3292324144 - - PREDICTED: MATE efflux family protein 5 isoform X1 [Populus euphratica]
17 Hb_000160_100 0.332526527 - - PREDICTED: uncharacterized transporter YBR287W-like [Populus euphratica]
18 Hb_002675_120 0.3344563768 - - DNA-repair protein xrcc1, putative [Ricinus communis]
19 Hb_002774_040 0.3354215372 - - PREDICTED: annexin D1 [Jatropha curcas]
20 Hb_000455_100 0.3365029686 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_078001_010 Hb_078001_010 Hb_000025_430 Hb_000025_430 Hb_078001_010--Hb_000025_430 Hb_005439_040 Hb_005439_040 Hb_078001_010--Hb_005439_040 Hb_003835_050 Hb_003835_050 Hb_078001_010--Hb_003835_050 Hb_011316_120 Hb_011316_120 Hb_078001_010--Hb_011316_120 Hb_001946_030 Hb_001946_030 Hb_078001_010--Hb_001946_030 Hb_155384_010 Hb_155384_010 Hb_078001_010--Hb_155384_010 Hb_001565_110 Hb_001565_110 Hb_000025_430--Hb_001565_110 Hb_002301_390 Hb_002301_390 Hb_000025_430--Hb_002301_390 Hb_000005_250 Hb_000005_250 Hb_000025_430--Hb_000005_250 Hb_094437_060 Hb_094437_060 Hb_000025_430--Hb_094437_060 Hb_004800_170 Hb_004800_170 Hb_000025_430--Hb_004800_170 Hb_082182_010 Hb_082182_010 Hb_005439_040--Hb_082182_010 Hb_005439_040--Hb_001565_110 Hb_002486_010 Hb_002486_010 Hb_005439_040--Hb_002486_010 Hb_043485_010 Hb_043485_010 Hb_005439_040--Hb_043485_010 Hb_000500_140 Hb_000500_140 Hb_005439_040--Hb_000500_140 Hb_007747_140 Hb_007747_140 Hb_005439_040--Hb_007747_140 Hb_003835_050--Hb_155384_010 Hb_003835_050--Hb_011316_120 Hb_003835_050--Hb_000025_430 Hb_008779_010 Hb_008779_010 Hb_003835_050--Hb_008779_010 Hb_008643_010 Hb_008643_010 Hb_003835_050--Hb_008643_010 Hb_000084_040 Hb_000084_040 Hb_011316_120--Hb_000084_040 Hb_000912_020 Hb_000912_020 Hb_011316_120--Hb_000912_020 Hb_004208_100 Hb_004208_100 Hb_011316_120--Hb_004208_100 Hb_008516_040 Hb_008516_040 Hb_011316_120--Hb_008516_040 Hb_011316_120--Hb_155384_010 Hb_004157_110 Hb_004157_110 Hb_011316_120--Hb_004157_110 Hb_001946_030--Hb_000005_250 Hb_028811_010 Hb_028811_010 Hb_001946_030--Hb_028811_010 Hb_183623_010 Hb_183623_010 Hb_001946_030--Hb_183623_010 Hb_001206_090 Hb_001206_090 Hb_001946_030--Hb_001206_090 Hb_001623_160 Hb_001623_160 Hb_001946_030--Hb_001623_160 Hb_004079_080 Hb_004079_080 Hb_001946_030--Hb_004079_080 Hb_155384_010--Hb_000084_040 Hb_054362_010 Hb_054362_010 Hb_155384_010--Hb_054362_010 Hb_127993_010 Hb_127993_010 Hb_155384_010--Hb_127993_010 Hb_155384_010--Hb_008779_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.725376 0.464759 0 0.232115 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60766 0.280609 4.11212 6.60532 0.753749

CAGE analysis