Hb_000025_430

Information

Type transcription factor
Description TF Family: SRS
Location Contig25: 406528-408849
Sequence    

Annotation

kegg
ID rcu:RCOM_0067120
description transcription factor, putative
nr
ID XP_002530898.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q94CK9
description Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana GN=LRP1 PE=1 SV=1
trembl
ID B9SY29
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0067120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26113: 406582-406779 , PASA_asmbl_26115: 407229-407683 , PASA_asmbl_26116: 407684-407800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_430 0.0 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
2 Hb_001565_110 0.1975039309 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
3 Hb_002301_390 0.2239181619 - - -
4 Hb_078001_010 0.2388747276 - - Uncharacterized protein TCM_000398 [Theobroma cacao]
5 Hb_000005_250 0.2400098511 - - conserved hypothetical protein [Ricinus communis]
6 Hb_094437_060 0.2406299744 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
7 Hb_004800_170 0.2410308482 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
8 Hb_024621_030 0.2457767303 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
9 Hb_000414_110 0.2540906654 - - PREDICTED: MATE efflux family protein 5 isoform X1 [Populus euphratica]
10 Hb_080147_100 0.2562740902 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
11 Hb_183623_010 0.2597590172 - - aldo-keto reductase, putative [Ricinus communis]
12 Hb_001355_130 0.2613189858 - - PREDICTED: uncharacterized protein LOC105137896 [Populus euphratica]
13 Hb_000165_210 0.2654521416 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
14 Hb_000120_390 0.2674387274 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
15 Hb_140049_050 0.2710221497 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
16 Hb_000260_290 0.2747160155 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
17 Hb_000417_320 0.2784032971 - - hypothetical protein CICLE_v10000333mg [Citrus clementina]
18 Hb_000300_130 0.2793656447 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
19 Hb_006453_010 0.2797546484 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
20 Hb_001258_060 0.2815599067 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]

Gene co-expression network

sample Hb_000025_430 Hb_000025_430 Hb_001565_110 Hb_001565_110 Hb_000025_430--Hb_001565_110 Hb_002301_390 Hb_002301_390 Hb_000025_430--Hb_002301_390 Hb_078001_010 Hb_078001_010 Hb_000025_430--Hb_078001_010 Hb_000005_250 Hb_000005_250 Hb_000025_430--Hb_000005_250 Hb_094437_060 Hb_094437_060 Hb_000025_430--Hb_094437_060 Hb_004800_170 Hb_004800_170 Hb_000025_430--Hb_004800_170 Hb_000260_290 Hb_000260_290 Hb_001565_110--Hb_000260_290 Hb_013766_010 Hb_013766_010 Hb_001565_110--Hb_013766_010 Hb_082182_010 Hb_082182_010 Hb_001565_110--Hb_082182_010 Hb_005439_040 Hb_005439_040 Hb_001565_110--Hb_005439_040 Hb_140049_050 Hb_140049_050 Hb_001565_110--Hb_140049_050 Hb_000120_390 Hb_000120_390 Hb_002301_390--Hb_000120_390 Hb_046994_010 Hb_046994_010 Hb_002301_390--Hb_046994_010 Hb_000417_320 Hb_000417_320 Hb_002301_390--Hb_000417_320 Hb_002301_390--Hb_094437_060 Hb_000805_320 Hb_000805_320 Hb_002301_390--Hb_000805_320 Hb_078001_010--Hb_005439_040 Hb_003835_050 Hb_003835_050 Hb_078001_010--Hb_003835_050 Hb_011316_120 Hb_011316_120 Hb_078001_010--Hb_011316_120 Hb_001946_030 Hb_001946_030 Hb_078001_010--Hb_001946_030 Hb_155384_010 Hb_155384_010 Hb_078001_010--Hb_155384_010 Hb_014894_010 Hb_014894_010 Hb_000005_250--Hb_014894_010 Hb_001258_060 Hb_001258_060 Hb_000005_250--Hb_001258_060 Hb_001246_030 Hb_001246_030 Hb_000005_250--Hb_001246_030 Hb_000005_250--Hb_001946_030 Hb_010334_020 Hb_010334_020 Hb_000005_250--Hb_010334_020 Hb_039145_010 Hb_039145_010 Hb_000005_250--Hb_039145_010 Hb_094437_060--Hb_000805_320 Hb_138710_010 Hb_138710_010 Hb_094437_060--Hb_138710_010 Hb_001355_130 Hb_001355_130 Hb_094437_060--Hb_001355_130 Hb_005873_010 Hb_005873_010 Hb_094437_060--Hb_005873_010 Hb_007432_020 Hb_007432_020 Hb_094437_060--Hb_007432_020 Hb_105602_010 Hb_105602_010 Hb_094437_060--Hb_105602_010 Hb_002918_230 Hb_002918_230 Hb_004800_170--Hb_002918_230 Hb_000975_150 Hb_000975_150 Hb_004800_170--Hb_000975_150 Hb_000879_190 Hb_000879_190 Hb_004800_170--Hb_000879_190 Hb_024621_030 Hb_024621_030 Hb_004800_170--Hb_024621_030 Hb_002006_140 Hb_002006_140 Hb_004800_170--Hb_002006_140 Hb_000056_330 Hb_000056_330 Hb_004800_170--Hb_000056_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.59194 10.17 0.678106 1.10094 0.562935 0.397345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1701 8.65165 17.6972 63.1781 1.22655

CAGE analysis