Hb_138710_010

Information

Type -
Description -
Location Contig138710: 4672-18385
Sequence    

Annotation

kegg
ID pxb:103941119
description gamma aminobutyrate transaminase 3, chloroplastic-like
nr
ID KHG00607.1
description Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]
swissprot
ID Q84P52
description Gamma aminobutyrate transaminase 3, chloroplastic OS=Solanum lycopersicum GN=GABA-TP3 PE=1 SV=1
trembl
ID A0A0B0MJP9
description Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Gossypium arboreum GN=F383_18765 PE=3 SV=1
Gene Ontology
ID GO:0008483
description gamma aminobutyrate transaminase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10600: 4649-4756 , PASA_asmbl_10601: 4777-18189 , PASA_asmbl_10602: 17043-18168
cDNA
(Sanger)
(ID:Location)		 039_K03.ab1: 17043-18168 , 042_E06.ab1: 16284-18173

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138710_010 0.0 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]
2 Hb_001390_030 0.1519873211 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
3 Hb_094437_060 0.1652829665 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
4 Hb_004079_080 0.1746898566 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
5 Hb_001332_040 0.1770950851 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
6 Hb_000805_320 0.1775717683 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
7 Hb_003226_120 0.184363957 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000120_720 0.1848451616 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
9 Hb_007153_040 0.1899343477 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
10 Hb_000011_290 0.1942106375 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
11 Hb_105602_010 0.1942507678 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
12 Hb_017170_030 0.19721985 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
13 Hb_001623_160 0.1975283123 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
14 Hb_004064_010 0.1999302735 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
15 Hb_002236_050 0.2005599003 - - -
16 Hb_004976_050 0.2007284629 - - -
17 Hb_001699_200 0.2046146144 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
18 Hb_001439_110 0.205136412 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
19 Hb_005873_010 0.2065701764 - - cysteine desulfurylase, putative [Ricinus communis]
20 Hb_000621_020 0.206768355 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_138710_010 Hb_138710_010 Hb_001390_030 Hb_001390_030 Hb_138710_010--Hb_001390_030 Hb_094437_060 Hb_094437_060 Hb_138710_010--Hb_094437_060 Hb_004079_080 Hb_004079_080 Hb_138710_010--Hb_004079_080 Hb_001332_040 Hb_001332_040 Hb_138710_010--Hb_001332_040 Hb_000805_320 Hb_000805_320 Hb_138710_010--Hb_000805_320 Hb_003226_120 Hb_003226_120 Hb_138710_010--Hb_003226_120 Hb_011633_040 Hb_011633_040 Hb_001390_030--Hb_011633_040 Hb_003813_120 Hb_003813_120 Hb_001390_030--Hb_003813_120 Hb_012545_090 Hb_012545_090 Hb_001390_030--Hb_012545_090 Hb_029921_030 Hb_029921_030 Hb_001390_030--Hb_029921_030 Hb_127886_010 Hb_127886_010 Hb_001390_030--Hb_127886_010 Hb_094437_060--Hb_000805_320 Hb_001355_130 Hb_001355_130 Hb_094437_060--Hb_001355_130 Hb_005873_010 Hb_005873_010 Hb_094437_060--Hb_005873_010 Hb_007432_020 Hb_007432_020 Hb_094437_060--Hb_007432_020 Hb_105602_010 Hb_105602_010 Hb_094437_060--Hb_105602_010 Hb_000621_020 Hb_000621_020 Hb_004079_080--Hb_000621_020 Hb_001214_090 Hb_001214_090 Hb_004079_080--Hb_001214_090 Hb_001623_160 Hb_001623_160 Hb_004079_080--Hb_001623_160 Hb_001971_060 Hb_001971_060 Hb_004079_080--Hb_001971_060 Hb_016522_010 Hb_016522_010 Hb_004079_080--Hb_016522_010 Hb_100147_010 Hb_100147_010 Hb_004079_080--Hb_100147_010 Hb_000286_060 Hb_000286_060 Hb_001332_040--Hb_000286_060 Hb_003266_100 Hb_003266_100 Hb_001332_040--Hb_003266_100 Hb_001332_040--Hb_016522_010 Hb_000103_270 Hb_000103_270 Hb_001332_040--Hb_000103_270 Hb_001332_040--Hb_000621_020 Hb_004429_090 Hb_004429_090 Hb_001332_040--Hb_004429_090 Hb_004242_190 Hb_004242_190 Hb_000805_320--Hb_004242_190 Hb_000805_320--Hb_105602_010 Hb_001258_060 Hb_001258_060 Hb_000805_320--Hb_001258_060 Hb_003073_180 Hb_003073_180 Hb_000805_320--Hb_003073_180 Hb_014894_010 Hb_014894_010 Hb_000805_320--Hb_014894_010 Hb_008226_070 Hb_008226_070 Hb_003226_120--Hb_008226_070 Hb_028872_110 Hb_028872_110 Hb_003226_120--Hb_028872_110 Hb_003226_120--Hb_004079_080 Hb_000159_120 Hb_000159_120 Hb_003226_120--Hb_000159_120 Hb_003906_170 Hb_003906_170 Hb_003226_120--Hb_003906_170 Hb_007943_160 Hb_007943_160 Hb_003226_120--Hb_007943_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1046 6.49911 9.06311 15.9314 3.16907 3.21932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2265 25.361 11.9259 66.2785 4.32392

CAGE analysis