Hb_007747_140

Information

Type transcription factor
Description TF Family: B3
Location Contig7747: 111864-113361
Sequence    

Annotation

kegg
ID rcu:RCOM_1258760
description transcription factor, putative
nr
ID XP_002530522.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9FNI3
description B3 domain-containing protein At5g06250 OS=Arabidopsis thaliana GN=At5g06250 PE=2 SV=1
trembl
ID B9SX03
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1258760 PE=4 SV=1
Gene Ontology
ID GO:0006355
description b3 domain-containing protein at2g36080-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57748: 111695-113051 , PASA_asmbl_57749: 113072-113162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007747_140 0.0 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
2 Hb_024468_020 0.1797188496 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
3 Hb_004328_040 0.1830618981 - - PREDICTED: wall-associated receptor kinase-like 8 [Vitis vinifera]
4 Hb_011056_020 0.1953293648 transcription factor TF Family: ERF AP2 domain transcription factor RAP2.3, putative [Ricinus communis]
5 Hb_005224_010 0.2065185501 - - glycine-rich protein [Bruguiera gymnorhiza]
6 Hb_002486_010 0.2121053843 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
7 Hb_000297_020 0.2124203753 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
8 Hb_001004_110 0.2170375472 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002577_010 0.2274906503 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
10 Hb_007747_180 0.2289362815 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
11 Hb_002291_010 0.2297257775 - - ring finger protein, putative [Ricinus communis]
12 Hb_007153_040 0.2356976352 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
13 Hb_001946_030 0.2357770736 - - grr1, plant, putative [Ricinus communis]
14 Hb_001565_110 0.2394238644 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
15 Hb_082182_010 0.2400291346 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_004064_010 0.2450419791 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
17 Hb_000116_420 0.2451419174 - - PREDICTED: monosaccharide-sensing protein 2-like [Jatropha curcas]
18 Hb_013766_010 0.2463032149 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
19 Hb_183623_010 0.2466566099 - - aldo-keto reductase, putative [Ricinus communis]
20 Hb_000579_020 0.2467923359 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]

Gene co-expression network

sample Hb_007747_140 Hb_007747_140 Hb_024468_020 Hb_024468_020 Hb_007747_140--Hb_024468_020 Hb_004328_040 Hb_004328_040 Hb_007747_140--Hb_004328_040 Hb_011056_020 Hb_011056_020 Hb_007747_140--Hb_011056_020 Hb_005224_010 Hb_005224_010 Hb_007747_140--Hb_005224_010 Hb_002486_010 Hb_002486_010 Hb_007747_140--Hb_002486_010 Hb_000297_020 Hb_000297_020 Hb_007747_140--Hb_000297_020 Hb_003777_050 Hb_003777_050 Hb_024468_020--Hb_003777_050 Hb_024468_020--Hb_005224_010 Hb_000016_190 Hb_000016_190 Hb_024468_020--Hb_000016_190 Hb_003972_080 Hb_003972_080 Hb_024468_020--Hb_003972_080 Hb_003609_020 Hb_003609_020 Hb_024468_020--Hb_003609_020 Hb_000110_320 Hb_000110_320 Hb_024468_020--Hb_000110_320 Hb_002577_010 Hb_002577_010 Hb_004328_040--Hb_002577_010 Hb_001004_110 Hb_001004_110 Hb_004328_040--Hb_001004_110 Hb_000011_400 Hb_000011_400 Hb_004328_040--Hb_000011_400 Hb_000318_330 Hb_000318_330 Hb_004328_040--Hb_000318_330 Hb_001123_320 Hb_001123_320 Hb_004328_040--Hb_001123_320 Hb_000676_190 Hb_000676_190 Hb_004328_040--Hb_000676_190 Hb_011056_020--Hb_004328_040 Hb_001014_120 Hb_001014_120 Hb_011056_020--Hb_001014_120 Hb_011056_020--Hb_001004_110 Hb_010480_030 Hb_010480_030 Hb_011056_020--Hb_010480_030 Hb_011056_020--Hb_024468_020 Hb_000327_220 Hb_000327_220 Hb_005224_010--Hb_000327_220 Hb_002239_060 Hb_002239_060 Hb_005224_010--Hb_002239_060 Hb_001159_080 Hb_001159_080 Hb_005224_010--Hb_001159_080 Hb_005489_100 Hb_005489_100 Hb_005224_010--Hb_005489_100 Hb_005224_010--Hb_003972_080 Hb_009314_010 Hb_009314_010 Hb_005224_010--Hb_009314_010 Hb_002805_020 Hb_002805_020 Hb_002486_010--Hb_002805_020 Hb_007747_180 Hb_007747_180 Hb_002486_010--Hb_007747_180 Hb_082182_010 Hb_082182_010 Hb_002486_010--Hb_082182_010 Hb_013766_010 Hb_013766_010 Hb_002486_010--Hb_013766_010 Hb_000011_420 Hb_000011_420 Hb_002486_010--Hb_000011_420 Hb_017170_030 Hb_017170_030 Hb_000297_020--Hb_017170_030 Hb_007153_040 Hb_007153_040 Hb_000297_020--Hb_007153_040 Hb_105602_010 Hb_105602_010 Hb_000297_020--Hb_105602_010 Hb_004208_130 Hb_004208_130 Hb_000297_020--Hb_004208_130 Hb_162275_020 Hb_162275_020 Hb_000297_020--Hb_162275_020 Hb_000614_170 Hb_000614_170 Hb_000297_020--Hb_000614_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.908227 0.891098 0.411349 0.412344 0.287569 0.0714778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.590354 1.49262 3.3264 3.39033 0.205559

CAGE analysis