Hb_001014_120

Information

Type transcription factor
Description TF Family: ERF
Location Contig1014: 112125-115414
Sequence    

Annotation

kegg
ID rcu:RCOM_1438370
description AP2 domain transcription factor RAP2.3, putative
nr
ID NP_001295725.1
description ethylene-responsive transcription factor ERF113 [Jatropha curcas]
swissprot
ID Q9LYU3
description Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1
trembl
ID R9QAL1
description AP2/ERF transcription factor OS=Jatropha curcas GN=AP2 PE=2 SV=1
Gene Ontology
ID GO:0005634
description ap2 domain-containing transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00710: 114694-115404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001014_120 0.0 transcription factor TF Family: ERF ethylene-responsive transcription factor ERF113 [Jatropha curcas]
2 Hb_001767_090 0.1878380285 - - ankyrin repeat protein [Bruguiera gymnorhiza]
3 Hb_011056_020 0.2030419027 transcription factor TF Family: ERF AP2 domain transcription factor RAP2.3, putative [Ricinus communis]
4 Hb_001005_070 0.2116443822 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
5 Hb_001184_110 0.2217944575 - - PREDICTED: uncharacterized protein LOC105650729 isoform X2 [Jatropha curcas]
6 Hb_002391_230 0.2225749134 - - hypothetical protein RCOM_0745080 [Ricinus communis]
7 Hb_112399_010 0.2253738664 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_001856_010 0.2261174115 - - DNA binding protein, putative [Ricinus communis]
9 Hb_005052_020 0.2278535671 - - -
10 Hb_001952_070 0.2316987672 - - 40S ribosomal protein S6B [Hevea brasiliensis]
11 Hb_012979_020 0.2346753503 - - PREDICTED: neutral alpha-glucosidase C [Solanum lycopersicum]
12 Hb_000221_270 0.2401195589 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
13 Hb_003747_040 0.2415800332 - - -
14 Hb_000069_460 0.2429346264 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
15 Hb_005625_060 0.2432172319 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
16 Hb_007694_050 0.2445687125 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
17 Hb_012395_190 0.245421883 - - hypothetical protein B456_005G053800 [Gossypium raimondii]
18 Hb_012725_090 0.2463097215 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
19 Hb_000056_100 0.2465541685 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
20 Hb_001856_020 0.2472400473 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001014_120 Hb_001014_120 Hb_001767_090 Hb_001767_090 Hb_001014_120--Hb_001767_090 Hb_011056_020 Hb_011056_020 Hb_001014_120--Hb_011056_020 Hb_001005_070 Hb_001005_070 Hb_001014_120--Hb_001005_070 Hb_001184_110 Hb_001184_110 Hb_001014_120--Hb_001184_110 Hb_002391_230 Hb_002391_230 Hb_001014_120--Hb_002391_230 Hb_112399_010 Hb_112399_010 Hb_001014_120--Hb_112399_010 Hb_012395_190 Hb_012395_190 Hb_001767_090--Hb_012395_190 Hb_027402_140 Hb_027402_140 Hb_001767_090--Hb_027402_140 Hb_000427_050 Hb_000427_050 Hb_001767_090--Hb_000427_050 Hb_001266_060 Hb_001266_060 Hb_001767_090--Hb_001266_060 Hb_005914_150 Hb_005914_150 Hb_001767_090--Hb_005914_150 Hb_029584_130 Hb_029584_130 Hb_001767_090--Hb_029584_130 Hb_004328_040 Hb_004328_040 Hb_011056_020--Hb_004328_040 Hb_007747_140 Hb_007747_140 Hb_011056_020--Hb_007747_140 Hb_001004_110 Hb_001004_110 Hb_011056_020--Hb_001004_110 Hb_010480_030 Hb_010480_030 Hb_011056_020--Hb_010480_030 Hb_024468_020 Hb_024468_020 Hb_011056_020--Hb_024468_020 Hb_006816_450 Hb_006816_450 Hb_001005_070--Hb_006816_450 Hb_003096_030 Hb_003096_030 Hb_001005_070--Hb_003096_030 Hb_000723_160 Hb_000723_160 Hb_001005_070--Hb_000723_160 Hb_001538_140 Hb_001538_140 Hb_001005_070--Hb_001538_140 Hb_014549_020 Hb_014549_020 Hb_001005_070--Hb_014549_020 Hb_007753_010 Hb_007753_010 Hb_001005_070--Hb_007753_010 Hb_007101_130 Hb_007101_130 Hb_001184_110--Hb_007101_130 Hb_006846_110 Hb_006846_110 Hb_001184_110--Hb_006846_110 Hb_008453_090 Hb_008453_090 Hb_001184_110--Hb_008453_090 Hb_000671_150 Hb_000671_150 Hb_001184_110--Hb_000671_150 Hb_000935_050 Hb_000935_050 Hb_001184_110--Hb_000935_050 Hb_007672_010 Hb_007672_010 Hb_001184_110--Hb_007672_010 Hb_011218_060 Hb_011218_060 Hb_002391_230--Hb_011218_060 Hb_001856_020 Hb_001856_020 Hb_002391_230--Hb_001856_020 Hb_000193_250 Hb_000193_250 Hb_002391_230--Hb_000193_250 Hb_000056_100 Hb_000056_100 Hb_002391_230--Hb_000056_100 Hb_000134_350 Hb_000134_350 Hb_002391_230--Hb_000134_350 Hb_007943_080 Hb_007943_080 Hb_002391_230--Hb_007943_080 Hb_005298_010 Hb_005298_010 Hb_112399_010--Hb_005298_010 Hb_055384_010 Hb_055384_010 Hb_112399_010--Hb_055384_010 Hb_112399_010--Hb_000056_100 Hb_112399_010--Hb_001184_110 Hb_000853_110 Hb_000853_110 Hb_112399_010--Hb_000853_110 Hb_005625_060 Hb_005625_060 Hb_112399_010--Hb_005625_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5254 7.52353 1.2321 1.09273 4.4339 28.3601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.83954 18.2064 34.4467 23.264 0.101745

CAGE analysis