Hb_001767_090

Information

Type -
Description -
Location Contig1767: 97026-98142
Sequence    

Annotation

kegg
ID tcc:TCM_042913
description Ankyrin repeat-containing protein, putative
nr
ID BAG15869.1
description ankyrin repeat protein [Bruguiera gymnorhiza]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID B1Q4U3
description Ankyrin repeat protein OS=Bruguiera gymnorhiza PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001767_090 0.0 - - ankyrin repeat protein [Bruguiera gymnorhiza]
2 Hb_012395_190 0.1246173553 - - hypothetical protein B456_005G053800 [Gossypium raimondii]
3 Hb_027402_140 0.1294468509 - - PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Jatropha curcas]
4 Hb_000427_050 0.1370279552 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_001266_060 0.1384446213 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
6 Hb_005914_150 0.1405430783 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
7 Hb_029584_130 0.1407340429 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
8 Hb_001226_020 0.1481816354 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]
9 Hb_004452_010 0.1483291664 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
10 Hb_000776_110 0.1518499194 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
11 Hb_001159_100 0.1542707361 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
12 Hb_005839_120 0.1551410402 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
13 Hb_000139_380 0.1556212238 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000041_020 0.1578407234 - - hypothetical protein POPTR_0009s11640g [Populus trichocarpa]
15 Hb_001538_010 0.1583459808 - - -
16 Hb_031042_020 0.1584260225 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
17 Hb_000007_150 0.1585196696 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
18 Hb_000500_040 0.1611211448 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007943_080 0.1616952699 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
20 Hb_000934_270 0.1621262413 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]

Gene co-expression network

sample Hb_001767_090 Hb_001767_090 Hb_012395_190 Hb_012395_190 Hb_001767_090--Hb_012395_190 Hb_027402_140 Hb_027402_140 Hb_001767_090--Hb_027402_140 Hb_000427_050 Hb_000427_050 Hb_001767_090--Hb_000427_050 Hb_001266_060 Hb_001266_060 Hb_001767_090--Hb_001266_060 Hb_005914_150 Hb_005914_150 Hb_001767_090--Hb_005914_150 Hb_029584_130 Hb_029584_130 Hb_001767_090--Hb_029584_130 Hb_000088_010 Hb_000088_010 Hb_012395_190--Hb_000088_010 Hb_049675_010 Hb_049675_010 Hb_012395_190--Hb_049675_010 Hb_007943_080 Hb_007943_080 Hb_012395_190--Hb_007943_080 Hb_000122_130 Hb_000122_130 Hb_012395_190--Hb_000122_130 Hb_010710_010 Hb_010710_010 Hb_012395_190--Hb_010710_010 Hb_000497_140 Hb_000497_140 Hb_012395_190--Hb_000497_140 Hb_000313_060 Hb_000313_060 Hb_027402_140--Hb_000313_060 Hb_001584_150 Hb_001584_150 Hb_027402_140--Hb_001584_150 Hb_001930_010 Hb_001930_010 Hb_027402_140--Hb_001930_010 Hb_002636_050 Hb_002636_050 Hb_027402_140--Hb_002636_050 Hb_027402_140--Hb_005914_150 Hb_009486_200 Hb_009486_200 Hb_027402_140--Hb_009486_200 Hb_001159_100 Hb_001159_100 Hb_000427_050--Hb_001159_100 Hb_002678_020 Hb_002678_020 Hb_000427_050--Hb_002678_020 Hb_000427_050--Hb_029584_130 Hb_000007_150 Hb_000007_150 Hb_000427_050--Hb_000007_150 Hb_000427_050--Hb_001266_060 Hb_004452_010 Hb_004452_010 Hb_000427_050--Hb_004452_010 Hb_001226_020 Hb_001226_020 Hb_001266_060--Hb_001226_020 Hb_001956_200 Hb_001956_200 Hb_001266_060--Hb_001956_200 Hb_001266_060--Hb_004452_010 Hb_031042_020 Hb_031042_020 Hb_001266_060--Hb_031042_020 Hb_003687_100 Hb_003687_100 Hb_001266_060--Hb_003687_100 Hb_005914_150--Hb_004452_010 Hb_005914_150--Hb_000427_050 Hb_005914_150--Hb_001584_150 Hb_005914_150--Hb_002636_050 Hb_005914_150--Hb_001266_060 Hb_000230_080 Hb_000230_080 Hb_005914_150--Hb_000230_080 Hb_029584_130--Hb_001159_100 Hb_029584_130--Hb_000007_150 Hb_034585_060 Hb_034585_060 Hb_029584_130--Hb_034585_060 Hb_000297_200 Hb_000297_200 Hb_029584_130--Hb_000297_200 Hb_000754_060 Hb_000754_060 Hb_029584_130--Hb_000754_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.015 1.11981 0.41553 0.239342 1.15797 2.75869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.426846 1.30562 3.51367 1.25854 0.306386

CAGE analysis