Hb_011056_020

Information

Type transcription factor
Description TF Family: ERF
Location Contig11056: 25657-29026
Sequence    

Annotation

kegg
ID rcu:RCOM_1438370
description AP2 domain transcription factor RAP2.3, putative
nr
ID XP_002512669.1
description AP2 domain transcription factor RAP2.3, putative [Ricinus communis]
swissprot
ID Q9LYU3
description Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1
trembl
ID B9RG00
description AP2 domain transcription factor RAP2.3, putative OS=Ricinus communis GN=RCOM_1438370 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf113

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03324: 25779-29097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011056_020 0.0 transcription factor TF Family: ERF AP2 domain transcription factor RAP2.3, putative [Ricinus communis]
2 Hb_004328_040 0.1880000687 - - PREDICTED: wall-associated receptor kinase-like 8 [Vitis vinifera]
3 Hb_007747_140 0.1953293648 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
4 Hb_001014_120 0.2030419027 transcription factor TF Family: ERF ethylene-responsive transcription factor ERF113 [Jatropha curcas]
5 Hb_001004_110 0.2041212015 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010480_030 0.2090390377 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Jatropha curcas]
7 Hb_024468_020 0.2131746761 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
8 Hb_004871_070 0.2250711666 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
9 Hb_001258_060 0.2258216018 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
10 Hb_000045_150 0.2265888202 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
11 Hb_001124_040 0.2311411129 - - PREDICTED: uncharacterized protein LOC103413595 [Malus domestica]
12 Hb_134469_010 0.2320035807 - - PREDICTED: protein argonaute 5 isoform X1 [Jatropha curcas]
13 Hb_006114_010 0.2346200176 - - PREDICTED: uncharacterized protein LOC105629068 [Jatropha curcas]
14 Hb_003609_020 0.2368641432 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]
15 Hb_000318_330 0.2395017448 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Jatropha curcas]
16 Hb_000367_190 0.2441086767 - - hypothetical protein RCOM_1470550 [Ricinus communis]
17 Hb_000676_190 0.2451035856 - - hypothetical protein JCGZ_08279 [Jatropha curcas]
18 Hb_004242_190 0.2464020831 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
19 Hb_000599_350 0.2469132305 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
20 Hb_003073_180 0.2472368902 - - hypothetical protein JCGZ_20198 [Jatropha curcas]

Gene co-expression network

sample Hb_011056_020 Hb_011056_020 Hb_004328_040 Hb_004328_040 Hb_011056_020--Hb_004328_040 Hb_007747_140 Hb_007747_140 Hb_011056_020--Hb_007747_140 Hb_001014_120 Hb_001014_120 Hb_011056_020--Hb_001014_120 Hb_001004_110 Hb_001004_110 Hb_011056_020--Hb_001004_110 Hb_010480_030 Hb_010480_030 Hb_011056_020--Hb_010480_030 Hb_024468_020 Hb_024468_020 Hb_011056_020--Hb_024468_020 Hb_002577_010 Hb_002577_010 Hb_004328_040--Hb_002577_010 Hb_004328_040--Hb_001004_110 Hb_000011_400 Hb_000011_400 Hb_004328_040--Hb_000011_400 Hb_000318_330 Hb_000318_330 Hb_004328_040--Hb_000318_330 Hb_001123_320 Hb_001123_320 Hb_004328_040--Hb_001123_320 Hb_000676_190 Hb_000676_190 Hb_004328_040--Hb_000676_190 Hb_007747_140--Hb_024468_020 Hb_007747_140--Hb_004328_040 Hb_005224_010 Hb_005224_010 Hb_007747_140--Hb_005224_010 Hb_002486_010 Hb_002486_010 Hb_007747_140--Hb_002486_010 Hb_000297_020 Hb_000297_020 Hb_007747_140--Hb_000297_020 Hb_001767_090 Hb_001767_090 Hb_001014_120--Hb_001767_090 Hb_001005_070 Hb_001005_070 Hb_001014_120--Hb_001005_070 Hb_001184_110 Hb_001184_110 Hb_001014_120--Hb_001184_110 Hb_002391_230 Hb_002391_230 Hb_001014_120--Hb_002391_230 Hb_112399_010 Hb_112399_010 Hb_001014_120--Hb_112399_010 Hb_010029_020 Hb_010029_020 Hb_001004_110--Hb_010029_020 Hb_010407_170 Hb_010407_170 Hb_001004_110--Hb_010407_170 Hb_004705_140 Hb_004705_140 Hb_001004_110--Hb_004705_140 Hb_001004_110--Hb_000676_190 Hb_134469_010 Hb_134469_010 Hb_001004_110--Hb_134469_010 Hb_001789_080 Hb_001789_080 Hb_010480_030--Hb_001789_080 Hb_006114_010 Hb_006114_010 Hb_010480_030--Hb_006114_010 Hb_001500_040 Hb_001500_040 Hb_010480_030--Hb_001500_040 Hb_003893_010 Hb_003893_010 Hb_010480_030--Hb_003893_010 Hb_000340_390 Hb_000340_390 Hb_010480_030--Hb_000340_390 Hb_000635_220 Hb_000635_220 Hb_010480_030--Hb_000635_220 Hb_003777_050 Hb_003777_050 Hb_024468_020--Hb_003777_050 Hb_024468_020--Hb_005224_010 Hb_000016_190 Hb_000016_190 Hb_024468_020--Hb_000016_190 Hb_003972_080 Hb_003972_080 Hb_024468_020--Hb_003972_080 Hb_003609_020 Hb_003609_020 Hb_024468_020--Hb_003609_020 Hb_000110_320 Hb_000110_320 Hb_024468_020--Hb_000110_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4533 5.6543 1.93897 2.31568 2.79493 7.27025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08671 12.2889 20.5555 26.3874 0.614904

CAGE analysis