Hb_001789_080

Information

Type -
Description -
Location Contig1789: 101292-104501
Sequence    

Annotation

kegg
ID rcu:RCOM_1583150
description ATP binding protein, putative
nr
ID XP_012090234.1
description PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
swissprot
ID Q5XVA8
description Uncharacterized protein At3g49055 OS=Arabidopsis thaliana GN=At3g49055 PE=2 SV=1
trembl
ID A0A067JRW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17206: 101988-102466 , PASA_asmbl_17207: 102488-103898
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_080 0.0 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
2 Hb_015292_030 0.0897589899 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
3 Hb_000203_160 0.1015998697 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
4 Hb_011218_040 0.1016186855 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
5 Hb_012022_030 0.1057455074 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
6 Hb_002216_040 0.1066639561 - - PREDICTED: protein PRD1 [Jatropha curcas]
7 Hb_039946_020 0.1072985246 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000260_270 0.108159318 - - zinc finger protein, putative [Ricinus communis]
9 Hb_001790_020 0.1095441379 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
10 Hb_000805_020 0.109637326 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
11 Hb_006400_030 0.1097290969 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
12 Hb_002900_190 0.1110480022 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GTL1 [Jatropha curcas]
13 Hb_018838_030 0.1113595382 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002685_010 0.1131468733 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
15 Hb_005699_070 0.1131722502 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH107 [Jatropha curcas]
16 Hb_003976_010 0.1150455033 - - methionine aminopeptidase, putative [Ricinus communis]
17 Hb_004837_040 0.1157483541 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
18 Hb_005064_060 0.1163666962 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_002027_120 0.1179810783 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
20 Hb_001226_040 0.1183430729 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001789_080 Hb_001789_080 Hb_015292_030 Hb_015292_030 Hb_001789_080--Hb_015292_030 Hb_000203_160 Hb_000203_160 Hb_001789_080--Hb_000203_160 Hb_011218_040 Hb_011218_040 Hb_001789_080--Hb_011218_040 Hb_012022_030 Hb_012022_030 Hb_001789_080--Hb_012022_030 Hb_002216_040 Hb_002216_040 Hb_001789_080--Hb_002216_040 Hb_039946_020 Hb_039946_020 Hb_001789_080--Hb_039946_020 Hb_018838_030 Hb_018838_030 Hb_015292_030--Hb_018838_030 Hb_000032_290 Hb_000032_290 Hb_015292_030--Hb_000032_290 Hb_001790_020 Hb_001790_020 Hb_015292_030--Hb_001790_020 Hb_002137_020 Hb_002137_020 Hb_015292_030--Hb_002137_020 Hb_015292_030--Hb_039946_020 Hb_003994_240 Hb_003994_240 Hb_015292_030--Hb_003994_240 Hb_126643_020 Hb_126643_020 Hb_000203_160--Hb_126643_020 Hb_004837_040 Hb_004837_040 Hb_000203_160--Hb_004837_040 Hb_002685_010 Hb_002685_010 Hb_000203_160--Hb_002685_010 Hb_004907_110 Hb_004907_110 Hb_000203_160--Hb_004907_110 Hb_000554_020 Hb_000554_020 Hb_000203_160--Hb_000554_020 Hb_002496_030 Hb_002496_030 Hb_000203_160--Hb_002496_030 Hb_000629_010 Hb_000629_010 Hb_011218_040--Hb_000629_010 Hb_004355_020 Hb_004355_020 Hb_011218_040--Hb_004355_020 Hb_000260_270 Hb_000260_270 Hb_011218_040--Hb_000260_270 Hb_005064_060 Hb_005064_060 Hb_011218_040--Hb_005064_060 Hb_010931_120 Hb_010931_120 Hb_011218_040--Hb_010931_120 Hb_000123_210 Hb_000123_210 Hb_011218_040--Hb_000123_210 Hb_012022_030--Hb_039946_020 Hb_012022_030--Hb_002137_020 Hb_004223_280 Hb_004223_280 Hb_012022_030--Hb_004223_280 Hb_000613_140 Hb_000613_140 Hb_012022_030--Hb_000613_140 Hb_000877_060 Hb_000877_060 Hb_012022_030--Hb_000877_060 Hb_000571_120 Hb_000571_120 Hb_012022_030--Hb_000571_120 Hb_000503_050 Hb_000503_050 Hb_002216_040--Hb_000503_050 Hb_005699_070 Hb_005699_070 Hb_002216_040--Hb_005699_070 Hb_002685_020 Hb_002685_020 Hb_002216_040--Hb_002685_020 Hb_000834_270 Hb_000834_270 Hb_002216_040--Hb_000834_270 Hb_000010_470 Hb_000010_470 Hb_002216_040--Hb_000010_470 Hb_004678_050 Hb_004678_050 Hb_002216_040--Hb_004678_050 Hb_039946_020--Hb_000629_010 Hb_004223_090 Hb_004223_090 Hb_039946_020--Hb_004223_090 Hb_000062_240 Hb_000062_240 Hb_039946_020--Hb_000062_240 Hb_003615_010 Hb_003615_010 Hb_039946_020--Hb_003615_010 Hb_002026_180 Hb_002026_180 Hb_039946_020--Hb_002026_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2534 11.2875 4.1502 4.94993 13.6997 15.817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7985 18.6048 19.6547 22.4467 5.96525

CAGE analysis