Hb_003096_030

Information

Type -
Description -
Location Contig3096: 30119-31322
Sequence    

Annotation

kegg
ID rcu:RCOM_0338130
description GTP cyclohydrolase II, putative (EC:3.5.4.25)
nr
ID XP_012081626.1
description PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
swissprot
ID Q6NLQ7
description Monofunctional riboflavin biosynthesis protein RIBA 2, chloroplastic OS=Arabidopsis thaliana GN=RIBA2 PE=1 SV=1
trembl
ID A0A067KBX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18665 PE=3 SV=1
Gene Ontology
ID GO:0003935
description gtp cyclohydrolase ii isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003096_030 0.0 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
2 Hb_003147_050 0.1342631612 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_012423_050 0.1524492455 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
4 Hb_005701_010 0.1614178855 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
5 Hb_001538_140 0.1621281015 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
6 Hb_002290_040 0.1626585557 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001427_230 0.1646109109 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000387_100 0.1660728744 - - -
9 Hb_004324_050 0.1723940663 - - PREDICTED: spermine synthase [Jatropha curcas]
10 Hb_000976_360 0.1739008409 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
11 Hb_002078_480 0.1741476816 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]
12 Hb_001396_220 0.176257122 - - nuclear transport factor, putative [Ricinus communis]
13 Hb_001173_040 0.1769974541 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
14 Hb_000690_070 0.1783604259 - - -
15 Hb_001006_260 0.1804387303 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
16 Hb_002078_460 0.1815060382 - - -
17 Hb_004429_070 0.1837763298 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
18 Hb_000491_090 0.1838912382 - - hypothetical protein B456_008G219400 [Gossypium raimondii]
19 Hb_001762_060 0.1854339508 - - pantothenate kinase, putative [Ricinus communis]
20 Hb_000032_220 0.1900460967 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003096_030 Hb_003096_030 Hb_003147_050 Hb_003147_050 Hb_003096_030--Hb_003147_050 Hb_012423_050 Hb_012423_050 Hb_003096_030--Hb_012423_050 Hb_005701_010 Hb_005701_010 Hb_003096_030--Hb_005701_010 Hb_001538_140 Hb_001538_140 Hb_003096_030--Hb_001538_140 Hb_002290_040 Hb_002290_040 Hb_003096_030--Hb_002290_040 Hb_001427_230 Hb_001427_230 Hb_003096_030--Hb_001427_230 Hb_003147_050--Hb_001538_140 Hb_002078_460 Hb_002078_460 Hb_003147_050--Hb_002078_460 Hb_003147_050--Hb_002290_040 Hb_000162_140 Hb_000162_140 Hb_003147_050--Hb_000162_140 Hb_005839_110 Hb_005839_110 Hb_003147_050--Hb_005839_110 Hb_003929_120 Hb_003929_120 Hb_003147_050--Hb_003929_120 Hb_001006_180 Hb_001006_180 Hb_012423_050--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_012423_050--Hb_001762_060 Hb_012423_050--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_012423_050--Hb_000398_160 Hb_009265_060 Hb_009265_060 Hb_012423_050--Hb_009265_060 Hb_000032_040 Hb_000032_040 Hb_012423_050--Hb_000032_040 Hb_000563_550 Hb_000563_550 Hb_005701_010--Hb_000563_550 Hb_002603_160 Hb_002603_160 Hb_005701_010--Hb_002603_160 Hb_002551_020 Hb_002551_020 Hb_005701_010--Hb_002551_020 Hb_005188_090 Hb_005188_090 Hb_005701_010--Hb_005188_090 Hb_000069_460 Hb_000069_460 Hb_005701_010--Hb_000069_460 Hb_005701_010--Hb_003147_050 Hb_000432_050 Hb_000432_050 Hb_001538_140--Hb_000432_050 Hb_001538_140--Hb_002290_040 Hb_005614_050 Hb_005614_050 Hb_001538_140--Hb_005614_050 Hb_000363_200 Hb_000363_200 Hb_001538_140--Hb_000363_200 Hb_001538_140--Hb_002078_460 Hb_002756_020 Hb_002756_020 Hb_002290_040--Hb_002756_020 Hb_004429_070 Hb_004429_070 Hb_002290_040--Hb_004429_070 Hb_001959_160 Hb_001959_160 Hb_002290_040--Hb_001959_160 Hb_003943_030 Hb_003943_030 Hb_002290_040--Hb_003943_030 Hb_001153_220 Hb_001153_220 Hb_002290_040--Hb_001153_220 Hb_001307_090 Hb_001307_090 Hb_001427_230--Hb_001307_090 Hb_000722_040 Hb_000722_040 Hb_001427_230--Hb_000722_040 Hb_001427_230--Hb_000398_160 Hb_000648_020 Hb_000648_020 Hb_001427_230--Hb_000648_020 Hb_000224_120 Hb_000224_120 Hb_001427_230--Hb_000224_120 Hb_124755_010 Hb_124755_010 Hb_001427_230--Hb_124755_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.897807 0.0448429 0 0.417963 0.447665 2.27199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.81823 1.8292 4.28746 1.47361 0.364282

CAGE analysis