Hb_007747_180

Information

Type transcription factor
Description TF Family: TCP
Location Contig7747: 150231-152462
Sequence    

Annotation

kegg
ID rcu:RCOM_1258620
description Nitrilase, putative (EC:3.5.5.1)
nr
ID XP_012074431.1
description PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
swissprot
ID Q42966
description Bifunctional nitrilase/nitrile hydratase NIT4B OS=Nicotiana tabacum GN=NIT4B PE=2 SV=1
trembl
ID B9SWZ9
description Nitrilase, putative OS=Ricinus communis GN=RCOM_1258620 PE=4 SV=1
Gene Ontology
ID GO:0016810
description bifunctional nitrilase nitrile hydratase nit4b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007747_180 0.0 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
2 Hb_082182_010 0.1662636179 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
3 Hb_002486_010 0.1872951485 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
4 Hb_002291_010 0.1990745893 - - ring finger protein, putative [Ricinus communis]
5 Hb_013766_010 0.2071827794 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
6 Hb_002805_020 0.2096946576 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
7 Hb_000297_020 0.2219189503 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
8 Hb_005224_010 0.2256530941 - - glycine-rich protein [Bruguiera gymnorhiza]
9 Hb_024468_020 0.22658666 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
10 Hb_004020_060 0.2288179046 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_007747_140 0.2289362815 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
12 Hb_005144_110 0.2315715834 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
13 Hb_000077_060 0.2334350033 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
14 Hb_000990_060 0.2398843566 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
15 Hb_004208_130 0.2420276776 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
16 Hb_007199_010 0.2431418901 - - PREDICTED: protein kinase APK1A, chloroplastic [Nelumbo nucifera]
17 Hb_000016_190 0.2437856143 - - ABC transporter B family member 28 [Glycine soja]
18 Hb_002078_440 0.2458344056 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
19 Hb_003972_080 0.2458581188 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
20 Hb_108329_020 0.2473384639 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007747_180 Hb_007747_180 Hb_082182_010 Hb_082182_010 Hb_007747_180--Hb_082182_010 Hb_002486_010 Hb_002486_010 Hb_007747_180--Hb_002486_010 Hb_002291_010 Hb_002291_010 Hb_007747_180--Hb_002291_010 Hb_013766_010 Hb_013766_010 Hb_007747_180--Hb_013766_010 Hb_002805_020 Hb_002805_020 Hb_007747_180--Hb_002805_020 Hb_000297_020 Hb_000297_020 Hb_007747_180--Hb_000297_020 Hb_005439_040 Hb_005439_040 Hb_082182_010--Hb_005439_040 Hb_082182_010--Hb_002486_010 Hb_043485_010 Hb_043485_010 Hb_082182_010--Hb_043485_010 Hb_015690_020 Hb_015690_020 Hb_082182_010--Hb_015690_020 Hb_024468_020 Hb_024468_020 Hb_082182_010--Hb_024468_020 Hb_002486_010--Hb_002805_020 Hb_002486_010--Hb_013766_010 Hb_007747_140 Hb_007747_140 Hb_002486_010--Hb_007747_140 Hb_000011_420 Hb_000011_420 Hb_002486_010--Hb_000011_420 Hb_001486_030 Hb_001486_030 Hb_002291_010--Hb_001486_030 Hb_028811_010 Hb_028811_010 Hb_002291_010--Hb_028811_010 Hb_001341_100 Hb_001341_100 Hb_002291_010--Hb_001341_100 Hb_003207_010 Hb_003207_010 Hb_002291_010--Hb_003207_010 Hb_001171_050 Hb_001171_050 Hb_002291_010--Hb_001171_050 Hb_004064_010 Hb_004064_010 Hb_002291_010--Hb_004064_010 Hb_001565_110 Hb_001565_110 Hb_013766_010--Hb_001565_110 Hb_001079_020 Hb_001079_020 Hb_013766_010--Hb_001079_020 Hb_002253_060 Hb_002253_060 Hb_013766_010--Hb_002253_060 Hb_013766_010--Hb_082182_010 Hb_002660_060 Hb_002660_060 Hb_002805_020--Hb_002660_060 Hb_000671_160 Hb_000671_160 Hb_002805_020--Hb_000671_160 Hb_002805_020--Hb_013766_010 Hb_002805_020--Hb_000297_020 Hb_017170_030 Hb_017170_030 Hb_000297_020--Hb_017170_030 Hb_007153_040 Hb_007153_040 Hb_000297_020--Hb_007153_040 Hb_105602_010 Hb_105602_010 Hb_000297_020--Hb_105602_010 Hb_004208_130 Hb_004208_130 Hb_000297_020--Hb_004208_130 Hb_162275_020 Hb_162275_020 Hb_000297_020--Hb_162275_020 Hb_000614_170 Hb_000614_170 Hb_000297_020--Hb_000614_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0130527 0.657359 0.198965 0.160419 0.0506007 0.122131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.653914 1.09908 2.20029 1.73517 0.343056

CAGE analysis