Hb_000084_040

Information

Type -
Description -
Location Contig84: 52104-53420
Sequence    

Annotation

kegg
ID rcu:RCOM_1007940
description hypothetical protein
nr
ID XP_002533524.1
description hypothetical protein RCOM_1007940 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5K5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1007940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_040 0.0 - - hypothetical protein RCOM_1007940 [Ricinus communis]
2 Hb_011316_120 0.1419653398 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
3 Hb_080653_010 0.2155555575 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_005285_010 0.2422451653 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
5 Hb_004157_110 0.2481642556 - - -
6 Hb_008516_040 0.2537305637 - - conserved hypothetical protein [Ricinus communis]
7 Hb_155384_010 0.2579646604 - - -
8 Hb_003754_080 0.271257742 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
9 Hb_000912_020 0.2746255311 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
10 Hb_018464_060 0.2758270975 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_007808_020 0.2813744979 - - -
12 Hb_004208_100 0.2834519519 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
13 Hb_127993_010 0.2873755439 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
14 Hb_054362_010 0.2880645817 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
15 Hb_000350_080 0.2895025362 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
16 Hb_169574_010 0.2911590501 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
17 Hb_048874_010 0.291560588 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
18 Hb_005799_040 0.2926349678 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
19 Hb_008246_050 0.2926433127 - - -
20 Hb_131060_010 0.298411736 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]

Gene co-expression network

sample Hb_000084_040 Hb_000084_040 Hb_011316_120 Hb_011316_120 Hb_000084_040--Hb_011316_120 Hb_080653_010 Hb_080653_010 Hb_000084_040--Hb_080653_010 Hb_005285_010 Hb_005285_010 Hb_000084_040--Hb_005285_010 Hb_004157_110 Hb_004157_110 Hb_000084_040--Hb_004157_110 Hb_008516_040 Hb_008516_040 Hb_000084_040--Hb_008516_040 Hb_155384_010 Hb_155384_010 Hb_000084_040--Hb_155384_010 Hb_000912_020 Hb_000912_020 Hb_011316_120--Hb_000912_020 Hb_004208_100 Hb_004208_100 Hb_011316_120--Hb_004208_100 Hb_011316_120--Hb_008516_040 Hb_011316_120--Hb_155384_010 Hb_011316_120--Hb_004157_110 Hb_000350_080 Hb_000350_080 Hb_080653_010--Hb_000350_080 Hb_000068_030 Hb_000068_030 Hb_080653_010--Hb_000068_030 Hb_005072_010 Hb_005072_010 Hb_080653_010--Hb_005072_010 Hb_007808_020 Hb_007808_020 Hb_080653_010--Hb_007808_020 Hb_001959_150 Hb_001959_150 Hb_080653_010--Hb_001959_150 Hb_162126_010 Hb_162126_010 Hb_005285_010--Hb_162126_010 Hb_000430_010 Hb_000430_010 Hb_005285_010--Hb_000430_010 Hb_125847_010 Hb_125847_010 Hb_005285_010--Hb_125847_010 Hb_008246_050 Hb_008246_050 Hb_005285_010--Hb_008246_050 Hb_005799_040 Hb_005799_040 Hb_005285_010--Hb_005799_040 Hb_048874_010 Hb_048874_010 Hb_005285_010--Hb_048874_010 Hb_020580_010 Hb_020580_010 Hb_004157_110--Hb_020580_010 Hb_013429_020 Hb_013429_020 Hb_004157_110--Hb_013429_020 Hb_174876_010 Hb_174876_010 Hb_004157_110--Hb_174876_010 Hb_028486_070 Hb_028486_070 Hb_004157_110--Hb_028486_070 Hb_150818_020 Hb_150818_020 Hb_008516_040--Hb_150818_020 Hb_008516_040--Hb_000912_020 Hb_108528_010 Hb_108528_010 Hb_008516_040--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_008516_040--Hb_179520_010 Hb_004064_020 Hb_004064_020 Hb_008516_040--Hb_004064_020 Hb_002989_060 Hb_002989_060 Hb_008516_040--Hb_002989_060 Hb_003835_050 Hb_003835_050 Hb_155384_010--Hb_003835_050 Hb_054362_010 Hb_054362_010 Hb_155384_010--Hb_054362_010 Hb_127993_010 Hb_127993_010 Hb_155384_010--Hb_127993_010 Hb_008779_010 Hb_008779_010 Hb_155384_010--Hb_008779_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.036332 0.0571623 0.267038 0.240045 0

CAGE analysis