Hb_002989_060

Information

Type -
Description -
Location Contig2989: 118369-118656
Sequence    

Annotation

kegg
ID rcu:RCOM_0254770
description hypothetical protein
nr
ID KDP26215.1
description hypothetical protein JCGZ_22461 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1W2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22461 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 023_C16.ab1: 118250-118697

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002989_060 0.0 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
2 Hb_150818_020 0.1603839307 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
3 Hb_000912_020 0.208685848 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
4 Hb_008516_040 0.2112586364 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009644_040 0.2717605909 - - PREDICTED: protein SKIP34 [Jatropha curcas]
6 Hb_003052_210 0.2742628483 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001355_130 0.2789797785 - - PREDICTED: uncharacterized protein LOC105137896 [Populus euphratica]
8 Hb_065378_010 0.2806256034 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
9 Hb_002151_050 0.2806615041 - - cytochrome P450, putative [Ricinus communis]
10 Hb_011316_120 0.2873302706 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
11 Hb_008725_040 0.2977966483 - - PREDICTED: uncharacterized protein At4g29660 [Nelumbo nucifera]
12 Hb_029920_040 0.2999911788 - - PREDICTED: uncharacterized protein LOC105635837 [Jatropha curcas]
13 Hb_004208_130 0.3019688484 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
14 Hb_000115_050 0.3037063299 - - -
15 Hb_073866_010 0.3125715672 - - PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
16 Hb_002253_060 0.3157910273 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004291_010 0.3179963415 - - (R)-limonene synthase, putative [Ricinus communis]
18 Hb_162275_020 0.3223789161 - - phosphate transporter [Manihot esculenta]
19 Hb_003913_080 0.3228014314 - - rpl27A [Hemiselmis andersenii]
20 Hb_007218_070 0.3239202744 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002989_060 Hb_002989_060 Hb_150818_020 Hb_150818_020 Hb_002989_060--Hb_150818_020 Hb_000912_020 Hb_000912_020 Hb_002989_060--Hb_000912_020 Hb_008516_040 Hb_008516_040 Hb_002989_060--Hb_008516_040 Hb_009644_040 Hb_009644_040 Hb_002989_060--Hb_009644_040 Hb_003052_210 Hb_003052_210 Hb_002989_060--Hb_003052_210 Hb_001355_130 Hb_001355_130 Hb_002989_060--Hb_001355_130 Hb_150818_020--Hb_008516_040 Hb_150818_020--Hb_000912_020 Hb_150818_020--Hb_003052_210 Hb_065378_010 Hb_065378_010 Hb_150818_020--Hb_065378_010 Hb_150818_020--Hb_009644_040 Hb_000912_020--Hb_008516_040 Hb_011316_120 Hb_011316_120 Hb_000912_020--Hb_011316_120 Hb_000912_020--Hb_065378_010 Hb_003754_080 Hb_003754_080 Hb_000912_020--Hb_003754_080 Hb_108528_010 Hb_108528_010 Hb_008516_040--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_008516_040--Hb_179520_010 Hb_004064_020 Hb_004064_020 Hb_008516_040--Hb_004064_020 Hb_073866_010 Hb_073866_010 Hb_009644_040--Hb_073866_010 Hb_001114_050 Hb_001114_050 Hb_009644_040--Hb_001114_050 Hb_001842_130 Hb_001842_130 Hb_009644_040--Hb_001842_130 Hb_009644_040--Hb_008516_040 Hb_115940_010 Hb_115940_010 Hb_009644_040--Hb_115940_010 Hb_000720_190 Hb_000720_190 Hb_003052_210--Hb_000720_190 Hb_003052_210--Hb_108528_010 Hb_003052_210--Hb_179520_010 Hb_105602_020 Hb_105602_020 Hb_003052_210--Hb_105602_020 Hb_017134_010 Hb_017134_010 Hb_003052_210--Hb_017134_010 Hb_094437_060 Hb_094437_060 Hb_001355_130--Hb_094437_060 Hb_002918_230 Hb_002918_230 Hb_001355_130--Hb_002918_230 Hb_183623_010 Hb_183623_010 Hb_001355_130--Hb_183623_010 Hb_005873_010 Hb_005873_010 Hb_001355_130--Hb_005873_010 Hb_000879_190 Hb_000879_190 Hb_001355_130--Hb_000879_190 Hb_004976_050 Hb_004976_050 Hb_001355_130--Hb_004976_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.700224 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.57494 3.93555 3.64897 8.09511 0

CAGE analysis