Hb_065378_010

Information

Type -
Description -
Location Contig65378: 12-534
Sequence    

Annotation

kegg
ID rcu:RCOM_0907010
description S-locus-specific glycoprotein S13 precursor, putative (EC:2.7.10.2)
nr
ID XP_002518600.1
description S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
swissprot
ID Q9SXB8
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 OS=Arabidopsis thaliana GN=At1g11330 PE=2 SV=3
trembl
ID B9RXY1
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_0907010 PE=3 SV=1
Gene Ontology
ID GO:0005886
description s-locus lectin protein kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_065378_010 0.0 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
2 Hb_000167_160 0.1658125953 - - -
3 Hb_000912_020 0.2099600618 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
4 Hb_150818_020 0.2168102688 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
5 Hb_029920_040 0.2206764529 - - PREDICTED: uncharacterized protein LOC105635837 [Jatropha curcas]
6 Hb_000316_020 0.2241746306 - - protein binding protein, putative [Ricinus communis]
7 Hb_008516_040 0.2297047104 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004195_100 0.2386188926 - - PREDICTED: uncharacterized protein LOC104106427 [Nicotiana tomentosiformis]
9 Hb_001150_030 0.2528683628 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
10 Hb_011316_120 0.2610679747 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
11 Hb_000731_250 0.2685033226 - - -
12 Hb_014549_020 0.2695821843 - - hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
13 Hb_012239_100 0.2732546465 - - hypothetical protein VITISV_043897 [Vitis vinifera]
14 Hb_000720_190 0.2737859494 - - unknown [Populus trichocarpa x Populus deltoides]
15 Hb_005214_130 0.2779368219 - - -
16 Hb_002151_050 0.2784321311 - - cytochrome P450, putative [Ricinus communis]
17 Hb_003878_030 0.2792563822 - - hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
18 Hb_002989_060 0.2806256034 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
19 Hb_002928_210 0.2828001468 - - -
20 Hb_003754_080 0.2849352929 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]

Gene co-expression network

sample Hb_065378_010 Hb_065378_010 Hb_000167_160 Hb_000167_160 Hb_065378_010--Hb_000167_160 Hb_000912_020 Hb_000912_020 Hb_065378_010--Hb_000912_020 Hb_150818_020 Hb_150818_020 Hb_065378_010--Hb_150818_020 Hb_029920_040 Hb_029920_040 Hb_065378_010--Hb_029920_040 Hb_000316_020 Hb_000316_020 Hb_065378_010--Hb_000316_020 Hb_008516_040 Hb_008516_040 Hb_065378_010--Hb_008516_040 Hb_014549_020 Hb_014549_020 Hb_000167_160--Hb_014549_020 Hb_005214_130 Hb_005214_130 Hb_000167_160--Hb_005214_130 Hb_000167_160--Hb_029920_040 Hb_001150_030 Hb_001150_030 Hb_000167_160--Hb_001150_030 Hb_105712_010 Hb_105712_010 Hb_000167_160--Hb_105712_010 Hb_000912_020--Hb_150818_020 Hb_000912_020--Hb_008516_040 Hb_011316_120 Hb_011316_120 Hb_000912_020--Hb_011316_120 Hb_002989_060 Hb_002989_060 Hb_000912_020--Hb_002989_060 Hb_003754_080 Hb_003754_080 Hb_000912_020--Hb_003754_080 Hb_150818_020--Hb_008516_040 Hb_150818_020--Hb_002989_060 Hb_003052_210 Hb_003052_210 Hb_150818_020--Hb_003052_210 Hb_009644_040 Hb_009644_040 Hb_150818_020--Hb_009644_040 Hb_004195_100 Hb_004195_100 Hb_029920_040--Hb_004195_100 Hb_002943_030 Hb_002943_030 Hb_029920_040--Hb_002943_030 Hb_029920_040--Hb_150818_020 Hb_029920_040--Hb_000912_020 Hb_029920_040--Hb_001150_030 Hb_000161_150 Hb_000161_150 Hb_000316_020--Hb_000161_150 Hb_009314_010 Hb_009314_010 Hb_000316_020--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000316_020--Hb_000771_130 Hb_000432_050 Hb_000432_050 Hb_000316_020--Hb_000432_050 Hb_000316_020--Hb_003754_080 Hb_001538_140 Hb_001538_140 Hb_000316_020--Hb_001538_140 Hb_108528_010 Hb_108528_010 Hb_008516_040--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_008516_040--Hb_179520_010 Hb_004064_020 Hb_004064_020 Hb_008516_040--Hb_004064_020 Hb_008516_040--Hb_002989_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0967021 0 0 0 0.098091 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.460101 0.361466 0.564669 0.551004 0

CAGE analysis