Hb_029920_040

Information

Type -
Description -
Location Contig29920: 56198-56728
Sequence    

Annotation

kegg
ID rcu:RCOM_0225640
description hypothetical protein
nr
ID XP_012074350.1
description PREDICTED: uncharacterized protein LOC105635837 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJ30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08781 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31271: 56053-57326
cDNA
(Sanger)
(ID:Location)		 013_J22.ab1: 56058-56768 , 026_C20.ab1: 56058-56719 , 038_K01.ab1: 56058-56925

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029920_040 0.0 - - PREDICTED: uncharacterized protein LOC105635837 [Jatropha curcas]
2 Hb_065378_010 0.2206764529 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
3 Hb_004195_100 0.2474751458 - - PREDICTED: uncharacterized protein LOC104106427 [Nicotiana tomentosiformis]
4 Hb_002943_030 0.2712328385 - - -
5 Hb_150818_020 0.2715620306 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
6 Hb_000912_020 0.2738455533 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
7 Hb_001150_030 0.2754643265 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
8 Hb_003052_210 0.2873109462 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002928_210 0.2882688943 - - -
10 Hb_000167_160 0.2932440242 - - -
11 Hb_002989_060 0.2999911788 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
12 Hb_000098_220 0.3022745557 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
13 Hb_073866_010 0.3037659194 - - PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
14 Hb_005214_130 0.3073188662 - - -
15 Hb_002918_040 0.3102541017 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
16 Hb_000720_190 0.3142321583 - - unknown [Populus trichocarpa x Populus deltoides]
17 Hb_007409_020 0.3200204054 - - -
18 Hb_007432_020 0.3261263526 - - hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
19 Hb_001959_260 0.3263296135 - - -
20 Hb_000317_300 0.3315369848 - - -

Gene co-expression network

sample Hb_029920_040 Hb_029920_040 Hb_065378_010 Hb_065378_010 Hb_029920_040--Hb_065378_010 Hb_004195_100 Hb_004195_100 Hb_029920_040--Hb_004195_100 Hb_002943_030 Hb_002943_030 Hb_029920_040--Hb_002943_030 Hb_150818_020 Hb_150818_020 Hb_029920_040--Hb_150818_020 Hb_000912_020 Hb_000912_020 Hb_029920_040--Hb_000912_020 Hb_001150_030 Hb_001150_030 Hb_029920_040--Hb_001150_030 Hb_000167_160 Hb_000167_160 Hb_065378_010--Hb_000167_160 Hb_065378_010--Hb_000912_020 Hb_065378_010--Hb_150818_020 Hb_000316_020 Hb_000316_020 Hb_065378_010--Hb_000316_020 Hb_008516_040 Hb_008516_040 Hb_065378_010--Hb_008516_040 Hb_002928_210 Hb_002928_210 Hb_004195_100--Hb_002928_210 Hb_005539_210 Hb_005539_210 Hb_004195_100--Hb_005539_210 Hb_006745_060 Hb_006745_060 Hb_004195_100--Hb_006745_060 Hb_005211_070 Hb_005211_070 Hb_004195_100--Hb_005211_070 Hb_001959_260 Hb_001959_260 Hb_004195_100--Hb_001959_260 Hb_002492_020 Hb_002492_020 Hb_004195_100--Hb_002492_020 Hb_000098_220 Hb_000098_220 Hb_002943_030--Hb_000098_220 Hb_002943_030--Hb_001150_030 Hb_105712_010 Hb_105712_010 Hb_002943_030--Hb_105712_010 Hb_012660_020 Hb_012660_020 Hb_002943_030--Hb_012660_020 Hb_150751_010 Hb_150751_010 Hb_002943_030--Hb_150751_010 Hb_081504_010 Hb_081504_010 Hb_002943_030--Hb_081504_010 Hb_150818_020--Hb_008516_040 Hb_002989_060 Hb_002989_060 Hb_150818_020--Hb_002989_060 Hb_150818_020--Hb_000912_020 Hb_003052_210 Hb_003052_210 Hb_150818_020--Hb_003052_210 Hb_009644_040 Hb_009644_040 Hb_150818_020--Hb_009644_040 Hb_000912_020--Hb_008516_040 Hb_011316_120 Hb_011316_120 Hb_000912_020--Hb_011316_120 Hb_000912_020--Hb_002989_060 Hb_003754_080 Hb_003754_080 Hb_000912_020--Hb_003754_080 Hb_001150_030--Hb_012660_020 Hb_003878_030 Hb_003878_030 Hb_001150_030--Hb_003878_030 Hb_003647_030 Hb_003647_030 Hb_001150_030--Hb_003647_030 Hb_002609_060 Hb_002609_060 Hb_001150_030--Hb_002609_060 Hb_001150_030--Hb_000098_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0665951 0 0 0 0.0490596 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.609 0.191399 0.164033 0.435355 0

CAGE analysis