Hb_081504_010

Information

Type -
Description -
Location Contig81504: 11-659
Sequence    

Annotation

kegg
ID tcc:TCM_018622
description Gag protease polyprotein
nr
ID XP_012479950.1
description PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVE7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_16817 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_081504_010 0.0 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
2 Hb_000997_330 0.1474316645 - - hypothetical protein POPTR_0010s08940g [Populus trichocarpa]
3 Hb_004157_120 0.1564717335 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
4 Hb_161072_020 0.1964992638 - - -
5 Hb_143766_100 0.2073232637 - - PREDICTED: uncharacterized protein LOC105637800 [Jatropha curcas]
6 Hb_000098_220 0.2400054325 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
7 Hb_000115_050 0.2447065223 - - -
8 Hb_012395_210 0.2506368937 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001150_030 0.253078607 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
10 Hb_001364_040 0.253693732 - - -
11 Hb_001538_140 0.2561697303 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
12 Hb_003878_030 0.2597701987 - - hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
13 Hb_012239_100 0.260459488 - - hypothetical protein VITISV_043897 [Vitis vinifera]
14 Hb_012660_020 0.262973182 - - -
15 Hb_000912_020 0.2634231848 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
16 Hb_099069_010 0.2677809097 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
17 Hb_005539_210 0.2695989429 - - -
18 Hb_002943_030 0.2700270509 - - -
19 Hb_003096_030 0.2718190626 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
20 Hb_001258_140 0.2735209896 - - -

Gene co-expression network

sample Hb_081504_010 Hb_081504_010 Hb_000997_330 Hb_000997_330 Hb_081504_010--Hb_000997_330 Hb_004157_120 Hb_004157_120 Hb_081504_010--Hb_004157_120 Hb_161072_020 Hb_161072_020 Hb_081504_010--Hb_161072_020 Hb_143766_100 Hb_143766_100 Hb_081504_010--Hb_143766_100 Hb_000098_220 Hb_000098_220 Hb_081504_010--Hb_000098_220 Hb_000115_050 Hb_000115_050 Hb_081504_010--Hb_000115_050 Hb_000997_330--Hb_161072_020 Hb_001364_040 Hb_001364_040 Hb_000997_330--Hb_001364_040 Hb_000997_330--Hb_004157_120 Hb_000997_330--Hb_143766_100 Hb_002400_090 Hb_002400_090 Hb_000997_330--Hb_002400_090 Hb_004157_120--Hb_161072_020 Hb_000340_340 Hb_000340_340 Hb_004157_120--Hb_000340_340 Hb_004157_120--Hb_001364_040 Hb_000186_340 Hb_000186_340 Hb_004157_120--Hb_000186_340 Hb_161072_020--Hb_002400_090 Hb_161072_020--Hb_001364_040 Hb_021888_130 Hb_021888_130 Hb_161072_020--Hb_021888_130 Hb_001258_140 Hb_001258_140 Hb_143766_100--Hb_001258_140 Hb_178968_170 Hb_178968_170 Hb_143766_100--Hb_178968_170 Hb_012395_210 Hb_012395_210 Hb_143766_100--Hb_012395_210 Hb_009838_040 Hb_009838_040 Hb_143766_100--Hb_009838_040 Hb_000281_230 Hb_000281_230 Hb_143766_100--Hb_000281_230 Hb_004223_260 Hb_004223_260 Hb_143766_100--Hb_004223_260 Hb_002943_030 Hb_002943_030 Hb_000098_220--Hb_002943_030 Hb_001623_430 Hb_001623_430 Hb_000098_220--Hb_001623_430 Hb_004650_100 Hb_004650_100 Hb_000098_220--Hb_004650_100 Hb_075653_020 Hb_075653_020 Hb_000098_220--Hb_075653_020 Hb_000106_100 Hb_000106_100 Hb_000098_220--Hb_000106_100 Hb_002609_060 Hb_002609_060 Hb_000098_220--Hb_002609_060 Hb_000749_240 Hb_000749_240 Hb_000115_050--Hb_000749_240 Hb_017134_010 Hb_017134_010 Hb_000115_050--Hb_017134_010 Hb_003913_080 Hb_003913_080 Hb_000115_050--Hb_003913_080 Hb_002067_100 Hb_002067_100 Hb_000115_050--Hb_002067_100 Hb_002151_050 Hb_002151_050 Hb_000115_050--Hb_002151_050 Hb_108528_010 Hb_108528_010 Hb_000115_050--Hb_108528_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0462387 0.111939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.320402 0.167859 0.29191 0.137997 0

CAGE analysis