Hb_000186_340

Information

Type -
Description -
Location Contig186: 383034-390049
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01440g
description POPTRDRAFT_890067; hypothetical protein
nr
ID XP_002317142.2
description hypothetical protein POPTR_0011s01440g [Populus trichocarpa]
swissprot
ID Q9SSE9
description Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana GN=JMJ25 PE=1 SV=1
trembl
ID B9HZA0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01440g PE=4 SV=2
Gene Ontology
ID GO:0003824
description lysine-specific demethylase jmj25-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_340 0.0 - - hypothetical protein POPTR_0011s01440g [Populus trichocarpa]
2 Hb_001837_020 0.2491330422 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X4 [Populus euphratica]
3 Hb_004157_120 0.2530136761 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
4 Hb_081504_010 0.2922373561 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
5 Hb_000997_330 0.3106155577 - - hypothetical protein POPTR_0010s08940g [Populus trichocarpa]
6 Hb_008643_110 0.3157902449 - - BnaCnng39750D [Brassica napus]
7 Hb_007218_070 0.3223369643 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004306_070 0.3288408658 - - hypothetical protein 0_18789_01, partial [Pinus taeda]
9 Hb_001538_140 0.3306846544 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
10 Hb_030429_010 0.3363623252 - - hypothetical protein POPTR_0001s44580g [Populus trichocarpa]
11 Hb_001100_010 0.3369478279 - - F-box/FBD/LRR-repeat protein [Medicago truncatula]
12 Hb_002659_040 0.3376244815 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
13 Hb_001238_050 0.3384655861 - - -
14 Hb_000220_050 0.3406053446 transcription factor TF Family: Orphans PREDICTED: putative zinc finger protein At1g68190 isoform X1 [Jatropha curcas]
15 Hb_002025_310 0.3420377669 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_003095_060 0.3439641294 - - hypothetical protein VITISV_030841 [Vitis vinifera]
17 Hb_034482_020 0.344525031 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
18 Hb_007054_020 0.3445532459 - - -
19 Hb_001512_020 0.3469022412 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
20 Hb_021443_080 0.3471216488 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]

Gene co-expression network

sample Hb_000186_340 Hb_000186_340 Hb_001837_020 Hb_001837_020 Hb_000186_340--Hb_001837_020 Hb_004157_120 Hb_004157_120 Hb_000186_340--Hb_004157_120 Hb_081504_010 Hb_081504_010 Hb_000186_340--Hb_081504_010 Hb_000997_330 Hb_000997_330 Hb_000186_340--Hb_000997_330 Hb_008643_110 Hb_008643_110 Hb_000186_340--Hb_008643_110 Hb_007218_070 Hb_007218_070 Hb_000186_340--Hb_007218_070 Hb_003581_190 Hb_003581_190 Hb_001837_020--Hb_003581_190 Hb_002644_030 Hb_002644_030 Hb_001837_020--Hb_002644_030 Hb_000340_340 Hb_000340_340 Hb_001837_020--Hb_000340_340 Hb_002374_430 Hb_002374_430 Hb_001837_020--Hb_002374_430 Hb_002025_310 Hb_002025_310 Hb_001837_020--Hb_002025_310 Hb_004157_120--Hb_081504_010 Hb_004157_120--Hb_000997_330 Hb_161072_020 Hb_161072_020 Hb_004157_120--Hb_161072_020 Hb_004157_120--Hb_000340_340 Hb_001364_040 Hb_001364_040 Hb_004157_120--Hb_001364_040 Hb_081504_010--Hb_000997_330 Hb_081504_010--Hb_161072_020 Hb_143766_100 Hb_143766_100 Hb_081504_010--Hb_143766_100 Hb_000098_220 Hb_000098_220 Hb_081504_010--Hb_000098_220 Hb_000115_050 Hb_000115_050 Hb_081504_010--Hb_000115_050 Hb_000997_330--Hb_161072_020 Hb_000997_330--Hb_001364_040 Hb_000997_330--Hb_143766_100 Hb_002400_090 Hb_002400_090 Hb_000997_330--Hb_002400_090 Hb_003209_200 Hb_003209_200 Hb_008643_110--Hb_003209_200 Hb_002659_040 Hb_002659_040 Hb_008643_110--Hb_002659_040 Hb_000003_270 Hb_000003_270 Hb_008643_110--Hb_000003_270 Hb_000424_210 Hb_000424_210 Hb_008643_110--Hb_000424_210 Hb_000477_080 Hb_000477_080 Hb_008643_110--Hb_000477_080 Hb_000003_040 Hb_000003_040 Hb_008643_110--Hb_000003_040 Hb_000184_230 Hb_000184_230 Hb_007218_070--Hb_000184_230 Hb_094437_060 Hb_094437_060 Hb_007218_070--Hb_094437_060 Hb_001699_200 Hb_001699_200 Hb_007218_070--Hb_001699_200 Hb_000614_170 Hb_000614_170 Hb_007218_070--Hb_000614_170 Hb_000200_290 Hb_000200_290 Hb_007218_070--Hb_000200_290 Hb_002151_050 Hb_002151_050 Hb_007218_070--Hb_002151_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0284661 0 0.0259025 0.0161377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0628588 0.0164868 0.0626372 0.0327757 0

CAGE analysis