Hb_000003_040

Information

Type -
Description -
Location Contig3: 17719-19360
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDP28106.1
description hypothetical protein JCGZ_13877 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13877 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_040 0.0 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
2 Hb_010174_060 0.1125390624 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
3 Hb_001021_130 0.1371998475 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
4 Hb_001199_050 0.1376220276 - - PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Jatropha curcas]
5 Hb_000789_220 0.1517467253 - - phosphofructokinase [Hevea brasiliensis]
6 Hb_003209_200 0.1537857953 transcription factor TF Family: WRKY hypothetical protein RCOM_1621230 [Ricinus communis]
7 Hb_000116_010 0.1553150104 - - isocitrate dehydrogenase, putative [Ricinus communis]
8 Hb_006615_020 0.1672855825 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
9 Hb_002374_100 0.1674709968 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
10 Hb_000317_290 0.1683377038 - - PREDICTED: VQ motif-containing protein 31 [Jatropha curcas]
11 Hb_001189_140 0.1683439346 - - -
12 Hb_000679_010 0.1700071593 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
13 Hb_000049_310 0.1728807223 - - Myosin-J heavy chain, partial [Glycine soja]
14 Hb_006647_020 0.1738010697 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
15 Hb_000010_470 0.1764893635 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
16 Hb_000504_200 0.1787040323 - - hypothetical protein JCGZ_10253 [Jatropha curcas]
17 Hb_065525_090 0.1797092255 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
18 Hb_009620_020 0.1812013537 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000976_430 0.1814981459 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
20 Hb_000317_280 0.1819957031 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_040 Hb_000003_040 Hb_010174_060 Hb_010174_060 Hb_000003_040--Hb_010174_060 Hb_001021_130 Hb_001021_130 Hb_000003_040--Hb_001021_130 Hb_001199_050 Hb_001199_050 Hb_000003_040--Hb_001199_050 Hb_000789_220 Hb_000789_220 Hb_000003_040--Hb_000789_220 Hb_003209_200 Hb_003209_200 Hb_000003_040--Hb_003209_200 Hb_000116_010 Hb_000116_010 Hb_000003_040--Hb_000116_010 Hb_010174_060--Hb_001021_130 Hb_000069_600 Hb_000069_600 Hb_010174_060--Hb_000069_600 Hb_006615_020 Hb_006615_020 Hb_010174_060--Hb_006615_020 Hb_010174_060--Hb_000789_220 Hb_000010_460 Hb_000010_460 Hb_010174_060--Hb_000010_460 Hb_034406_030 Hb_034406_030 Hb_010174_060--Hb_034406_030 Hb_003647_060 Hb_003647_060 Hb_001021_130--Hb_003647_060 Hb_007508_090 Hb_007508_090 Hb_001021_130--Hb_007508_090 Hb_074783_010 Hb_074783_010 Hb_001021_130--Hb_074783_010 Hb_000189_560 Hb_000189_560 Hb_001021_130--Hb_000189_560 Hb_001969_090 Hb_001969_090 Hb_001021_130--Hb_001969_090 Hb_002163_020 Hb_002163_020 Hb_001199_050--Hb_002163_020 Hb_000679_010 Hb_000679_010 Hb_001199_050--Hb_000679_010 Hb_000120_960 Hb_000120_960 Hb_001199_050--Hb_000120_960 Hb_002660_070 Hb_002660_070 Hb_001199_050--Hb_002660_070 Hb_000915_090 Hb_000915_090 Hb_001199_050--Hb_000915_090 Hb_000167_140 Hb_000167_140 Hb_001199_050--Hb_000167_140 Hb_004705_120 Hb_004705_120 Hb_000789_220--Hb_004705_120 Hb_001314_020 Hb_001314_020 Hb_000789_220--Hb_001314_020 Hb_056753_010 Hb_056753_010 Hb_000789_220--Hb_056753_010 Hb_003687_240 Hb_003687_240 Hb_000789_220--Hb_003687_240 Hb_008616_070 Hb_008616_070 Hb_000789_220--Hb_008616_070 Hb_000003_270 Hb_000003_270 Hb_003209_200--Hb_000003_270 Hb_000196_080 Hb_000196_080 Hb_003209_200--Hb_000196_080 Hb_000424_210 Hb_000424_210 Hb_003209_200--Hb_000424_210 Hb_002138_010 Hb_002138_010 Hb_003209_200--Hb_002138_010 Hb_003209_200--Hb_010174_060 Hb_012291_030 Hb_012291_030 Hb_003209_200--Hb_012291_030 Hb_006647_020 Hb_006647_020 Hb_000116_010--Hb_006647_020 Hb_003976_030 Hb_003976_030 Hb_000116_010--Hb_003976_030 Hb_000063_140 Hb_000063_140 Hb_000116_010--Hb_000063_140 Hb_001617_050 Hb_001617_050 Hb_000116_010--Hb_001617_050 Hb_001892_020 Hb_001892_020 Hb_000116_010--Hb_001892_020 Hb_004204_170 Hb_004204_170 Hb_000116_010--Hb_004204_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.28947 0.270847 0.15773 0.0857813 0.228691 0.0680224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.530786 0.231894 0.592432 0.374215 0.0939923

CAGE analysis