Hb_000003_270

Information

Type -
Description -
Location Contig3: 158574-160309
Sequence    

Annotation

kegg
ID rcu:RCOM_1453990
description Cytokinin dehydrogenase, putative (EC:1.5.99.12)
nr
ID XP_012068593.1
description PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
swissprot
ID Q9LY71
description Cytokinin dehydrogenase 6 OS=Arabidopsis thaliana GN=CKX6 PE=2 SV=2
trembl
ID B9RGG6
description Cytokinin dehydrogenase, putative OS=Ricinus communis GN=RCOM_1453990 PE=4 SV=1
Gene Ontology
ID GO:0008762
description cytokinin dehydrogenase 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31395: 158211-158667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_270 0.0 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
2 Hb_003209_200 0.1257067897 transcription factor TF Family: WRKY hypothetical protein RCOM_1621230 [Ricinus communis]
3 Hb_002138_010 0.1295795753 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
4 Hb_001338_040 0.1342907041 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
5 Hb_012291_030 0.1364107591 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X3 [Populus euphratica]
6 Hb_006065_010 0.1433299927 - - PREDICTED: uncharacterized protein LOC105639733 [Jatropha curcas]
7 Hb_000196_080 0.155275901 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
8 Hb_005614_050 0.159468305 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
9 Hb_000368_010 0.1603522173 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 18 [Jatropha curcas]
10 Hb_000789_220 0.1647570337 - - phosphofructokinase [Hevea brasiliensis]
11 Hb_000424_210 0.1673562157 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
12 Hb_002374_400 0.1680987768 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
13 Hb_005463_030 0.168586274 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
14 Hb_000317_280 0.1703134652 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
15 Hb_000836_080 0.1705026428 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
16 Hb_007943_090 0.171091799 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
17 Hb_001199_050 0.1712761774 - - PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Jatropha curcas]
18 Hb_000327_220 0.1722774718 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
19 Hb_007161_010 0.1724507481 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
20 Hb_000622_090 0.1735021742 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_270 Hb_000003_270 Hb_003209_200 Hb_003209_200 Hb_000003_270--Hb_003209_200 Hb_002138_010 Hb_002138_010 Hb_000003_270--Hb_002138_010 Hb_001338_040 Hb_001338_040 Hb_000003_270--Hb_001338_040 Hb_012291_030 Hb_012291_030 Hb_000003_270--Hb_012291_030 Hb_006065_010 Hb_006065_010 Hb_000003_270--Hb_006065_010 Hb_000196_080 Hb_000196_080 Hb_000003_270--Hb_000196_080 Hb_003209_200--Hb_000196_080 Hb_000424_210 Hb_000424_210 Hb_003209_200--Hb_000424_210 Hb_003209_200--Hb_002138_010 Hb_010174_060 Hb_010174_060 Hb_003209_200--Hb_010174_060 Hb_003209_200--Hb_012291_030 Hb_002374_400 Hb_002374_400 Hb_002138_010--Hb_002374_400 Hb_001832_120 Hb_001832_120 Hb_002138_010--Hb_001832_120 Hb_000742_110 Hb_000742_110 Hb_002138_010--Hb_000742_110 Hb_007181_070 Hb_007181_070 Hb_002138_010--Hb_007181_070 Hb_000317_280 Hb_000317_280 Hb_001338_040--Hb_000317_280 Hb_000574_350 Hb_000574_350 Hb_001338_040--Hb_000574_350 Hb_002056_060 Hb_002056_060 Hb_001338_040--Hb_002056_060 Hb_007747_200 Hb_007747_200 Hb_001338_040--Hb_007747_200 Hb_000836_080 Hb_000836_080 Hb_001338_040--Hb_000836_080 Hb_000935_050 Hb_000935_050 Hb_001338_040--Hb_000935_050 Hb_002600_040 Hb_002600_040 Hb_012291_030--Hb_002600_040 Hb_021443_080 Hb_021443_080 Hb_012291_030--Hb_021443_080 Hb_000622_090 Hb_000622_090 Hb_012291_030--Hb_000622_090 Hb_093458_050 Hb_093458_050 Hb_012291_030--Hb_093458_050 Hb_003783_030 Hb_003783_030 Hb_012291_030--Hb_003783_030 Hb_000108_190 Hb_000108_190 Hb_012291_030--Hb_000108_190 Hb_004993_050 Hb_004993_050 Hb_006065_010--Hb_004993_050 Hb_005463_030 Hb_005463_030 Hb_006065_010--Hb_005463_030 Hb_000696_040 Hb_000696_040 Hb_006065_010--Hb_000696_040 Hb_006065_010--Hb_001338_040 Hb_006065_010--Hb_000622_090 Hb_001699_130 Hb_001699_130 Hb_006065_010--Hb_001699_130 Hb_000196_080--Hb_000424_210 Hb_000125_030 Hb_000125_030 Hb_000196_080--Hb_000125_030 Hb_003504_020 Hb_003504_020 Hb_000196_080--Hb_003504_020 Hb_000162_140 Hb_000162_140 Hb_000196_080--Hb_000162_140 Hb_003581_260 Hb_003581_260 Hb_000196_080--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_000196_080--Hb_007382_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00865 1.58714 0.307108 0.674956 1.92568 0.508236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.37519 3.46056 4.67476 2.08923 0.247714

CAGE analysis