Hb_006065_010

Information

Type -
Description -
Location Contig6065: 24933-54030
Sequence    

Annotation

kegg
ID rcu:RCOM_1410570
description hypothetical protein
nr
ID XP_012079261.1
description PREDICTED: uncharacterized protein LOC105639733 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K772
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12423 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50788: 40014-40285 , PASA_asmbl_50789: 41091-41444 , PASA_asmbl_50792: 49395-49894 , PASA_asmbl_50793: 49955-50365 , PASA_asmbl_50794: 51773-52140 , PASA_asmbl_50795: 52147-52861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006065_010 0.0 - - PREDICTED: uncharacterized protein LOC105639733 [Jatropha curcas]
2 Hb_004993_050 0.1226818214 - - -
3 Hb_005463_030 0.1257852872 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
4 Hb_000696_040 0.1261380702 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_001338_040 0.1294707733 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000622_090 0.1316371335 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
7 Hb_001699_130 0.1339114292 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
8 Hb_012291_030 0.1354560411 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X3 [Populus euphratica]
9 Hb_086639_030 0.1359500986 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_000175_060 0.1382151634 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
11 Hb_005463_040 0.1399246648 - - signal transducer, putative [Ricinus communis]
12 Hb_007161_010 0.1406372565 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
13 Hb_000003_270 0.1433299927 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
14 Hb_000367_060 0.1455667485 - - diacylglycerol kinase, theta, putative [Ricinus communis]
15 Hb_000599_350 0.1488117965 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
16 Hb_002056_060 0.1493246362 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
17 Hb_001663_050 0.149378223 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
18 Hb_172932_010 0.1505773433 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001811_030 0.1512026126 - - Beta-ureidopropionase, putative [Ricinus communis]
20 Hb_000617_150 0.1514535629 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]

Gene co-expression network

sample Hb_006065_010 Hb_006065_010 Hb_004993_050 Hb_004993_050 Hb_006065_010--Hb_004993_050 Hb_005463_030 Hb_005463_030 Hb_006065_010--Hb_005463_030 Hb_000696_040 Hb_000696_040 Hb_006065_010--Hb_000696_040 Hb_001338_040 Hb_001338_040 Hb_006065_010--Hb_001338_040 Hb_000622_090 Hb_000622_090 Hb_006065_010--Hb_000622_090 Hb_001699_130 Hb_001699_130 Hb_006065_010--Hb_001699_130 Hb_002056_060 Hb_002056_060 Hb_004993_050--Hb_002056_060 Hb_016901_010 Hb_016901_010 Hb_004993_050--Hb_016901_010 Hb_001158_140 Hb_001158_140 Hb_004993_050--Hb_001158_140 Hb_006816_140 Hb_006816_140 Hb_004993_050--Hb_006816_140 Hb_005463_040 Hb_005463_040 Hb_004993_050--Hb_005463_040 Hb_004993_050--Hb_001699_130 Hb_000175_060 Hb_000175_060 Hb_005463_030--Hb_000175_060 Hb_001998_050 Hb_001998_050 Hb_005463_030--Hb_001998_050 Hb_001442_020 Hb_001442_020 Hb_005463_030--Hb_001442_020 Hb_007943_090 Hb_007943_090 Hb_005463_030--Hb_007943_090 Hb_000227_230 Hb_000227_230 Hb_005463_030--Hb_000227_230 Hb_005645_010 Hb_005645_010 Hb_005463_030--Hb_005645_010 Hb_000696_040--Hb_001699_130 Hb_004607_030 Hb_004607_030 Hb_000696_040--Hb_004607_030 Hb_000696_040--Hb_016901_010 Hb_000617_150 Hb_000617_150 Hb_000696_040--Hb_000617_150 Hb_000062_220 Hb_000062_220 Hb_000696_040--Hb_000062_220 Hb_002631_060 Hb_002631_060 Hb_000696_040--Hb_002631_060 Hb_000317_280 Hb_000317_280 Hb_001338_040--Hb_000317_280 Hb_000574_350 Hb_000574_350 Hb_001338_040--Hb_000574_350 Hb_001338_040--Hb_002056_060 Hb_007747_200 Hb_007747_200 Hb_001338_040--Hb_007747_200 Hb_000836_080 Hb_000836_080 Hb_001338_040--Hb_000836_080 Hb_000935_050 Hb_000935_050 Hb_001338_040--Hb_000935_050 Hb_000120_680 Hb_000120_680 Hb_000622_090--Hb_000120_680 Hb_000240_090 Hb_000240_090 Hb_000622_090--Hb_000240_090 Hb_021409_160 Hb_021409_160 Hb_000622_090--Hb_021409_160 Hb_004994_100 Hb_004994_100 Hb_000622_090--Hb_004994_100 Hb_000563_250 Hb_000563_250 Hb_000622_090--Hb_000563_250 Hb_004126_070 Hb_004126_070 Hb_000622_090--Hb_004126_070 Hb_001699_130--Hb_000617_150 Hb_001699_130--Hb_000120_680 Hb_000723_080 Hb_000723_080 Hb_001699_130--Hb_000723_080 Hb_010608_050 Hb_010608_050 Hb_001699_130--Hb_010608_050 Hb_001699_130--Hb_016901_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.228487 0.150174 0.0489588 0.145997 0.328414 0.117134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.254667 0.511093 0.638261 0.372477 0.0863619

CAGE analysis