Hb_005645_010

Information

Type -
Description -
Location Contig5645: 10456-13034
Sequence    

Annotation

kegg
ID rcu:RCOM_1196130
description rhythmically-expressed protein 2 protein, putative
nr
ID XP_002528147.1
description rhythmically-expressed protein 2 protein, putative [Ricinus communis]
swissprot
ID Q5E9D6
description Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Bos taurus GN=HDHD3 PE=2 SV=1
trembl
ID B9SQ78
description Rhythmically-expressed protein 2 protein, putative OS=Ricinus communis GN=RCOM_1196130 PE=4 SV=1
Gene Ontology
ID GO:0016787
description haloacid dehalogenase-like hydrolase domain-containing protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48963: 11284-11427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005645_010 0.0 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
2 Hb_004126_070 0.0977268488 desease resistance Gene Name: CDC48_2 PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
3 Hb_005463_030 0.1079271383 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
4 Hb_001454_120 0.1098012394 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001269_630 0.110273207 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
6 Hb_000841_020 0.1124148974 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
7 Hb_034299_050 0.1149419558 - - hypothetical protein CICLE_v10031248mg [Citrus clementina]
8 Hb_001059_030 0.1188869183 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
9 Hb_002110_120 0.1195894187 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
10 Hb_002014_100 0.1226122876 - - sugar transporter, putative [Ricinus communis]
11 Hb_000108_190 0.1237793504 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Jatropha curcas]
12 Hb_150196_010 0.1257474949 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
13 Hb_143496_010 0.1259363924 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
14 Hb_000622_090 0.1260260804 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
15 Hb_000175_060 0.1266178877 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
16 Hb_000086_280 0.1285756204 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
17 Hb_005496_010 0.1287179171 - - PREDICTED: PXMP2/4 family protein 4 [Jatropha curcas]
18 Hb_000300_160 0.1290814349 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
19 Hb_005883_100 0.1295674057 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
20 Hb_004586_320 0.1303927487 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]

Gene co-expression network

sample Hb_005645_010 Hb_005645_010 Hb_004126_070 Hb_004126_070 Hb_005645_010--Hb_004126_070 Hb_005463_030 Hb_005463_030 Hb_005645_010--Hb_005463_030 Hb_001454_120 Hb_001454_120 Hb_005645_010--Hb_001454_120 Hb_001269_630 Hb_001269_630 Hb_005645_010--Hb_001269_630 Hb_000841_020 Hb_000841_020 Hb_005645_010--Hb_000841_020 Hb_034299_050 Hb_034299_050 Hb_005645_010--Hb_034299_050 Hb_000108_190 Hb_000108_190 Hb_004126_070--Hb_000108_190 Hb_004126_070--Hb_000841_020 Hb_001897_040 Hb_001897_040 Hb_004126_070--Hb_001897_040 Hb_000291_080 Hb_000291_080 Hb_004126_070--Hb_000291_080 Hb_032264_110 Hb_032264_110 Hb_004126_070--Hb_032264_110 Hb_001059_030 Hb_001059_030 Hb_004126_070--Hb_001059_030 Hb_000175_060 Hb_000175_060 Hb_005463_030--Hb_000175_060 Hb_001998_050 Hb_001998_050 Hb_005463_030--Hb_001998_050 Hb_001442_020 Hb_001442_020 Hb_005463_030--Hb_001442_020 Hb_007943_090 Hb_007943_090 Hb_005463_030--Hb_007943_090 Hb_000227_230 Hb_000227_230 Hb_005463_030--Hb_000227_230 Hb_143496_010 Hb_143496_010 Hb_001454_120--Hb_143496_010 Hb_150196_010 Hb_150196_010 Hb_001454_120--Hb_150196_010 Hb_032803_010 Hb_032803_010 Hb_001454_120--Hb_032803_010 Hb_027073_050 Hb_027073_050 Hb_001454_120--Hb_027073_050 Hb_007317_160 Hb_007317_160 Hb_001454_120--Hb_007317_160 Hb_002110_120 Hb_002110_120 Hb_001269_630--Hb_002110_120 Hb_001832_060 Hb_001832_060 Hb_001269_630--Hb_001832_060 Hb_007317_150 Hb_007317_150 Hb_001269_630--Hb_007317_150 Hb_003656_070 Hb_003656_070 Hb_001269_630--Hb_003656_070 Hb_000020_060 Hb_000020_060 Hb_001269_630--Hb_000020_060 Hb_002686_020 Hb_002686_020 Hb_001269_630--Hb_002686_020 Hb_000398_040 Hb_000398_040 Hb_000841_020--Hb_000398_040 Hb_017225_020 Hb_017225_020 Hb_000841_020--Hb_017225_020 Hb_000841_020--Hb_000108_190 Hb_002111_040 Hb_002111_040 Hb_000841_020--Hb_002111_040 Hb_009113_070 Hb_009113_070 Hb_000841_020--Hb_009113_070 Hb_004994_100 Hb_004994_100 Hb_034299_050--Hb_004994_100 Hb_000331_080 Hb_000331_080 Hb_034299_050--Hb_000331_080 Hb_021596_090 Hb_021596_090 Hb_034299_050--Hb_021596_090 Hb_008878_030 Hb_008878_030 Hb_034299_050--Hb_008878_030 Hb_000201_120 Hb_000201_120 Hb_034299_050--Hb_000201_120 Hb_000270_370 Hb_000270_370 Hb_034299_050--Hb_000270_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.527579 0.320054 0.515621 0.760415 1.44859 0.52098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23202 2.24301 1.3988 0.963101 0.345993

CAGE analysis