Hb_001454_120

Information

Type -
Description -
Location Contig1454: 80323-81353
Sequence    

Annotation

kegg
ID rcu:RCOM_0680930
description hypothetical protein
nr
ID XP_002516917.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RT48
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0680930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11738: 79784-82258
cDNA
(Sanger)
(ID:Location)		 025_B14.ab1: 79784-82250

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_143496_010 0.0979217452 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
3 Hb_150196_010 0.1053991891 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
4 Hb_032803_010 0.1072531925 - - PREDICTED: glycosyltransferase-like At2g41451 [Jatropha curcas]
5 Hb_027073_050 0.1092037171 - - PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
6 Hb_005645_010 0.1098012394 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
7 Hb_007317_160 0.1199286521 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
8 Hb_003581_150 0.1220927227 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
9 Hb_011609_020 0.1226605308 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004126_070 0.1232333345 desease resistance Gene Name: CDC48_2 PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
11 Hb_010175_040 0.1249665197 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
12 Hb_089140_100 0.1252939532 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
13 Hb_004156_040 0.125602277 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
14 Hb_002631_020 0.125694745 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
15 Hb_005063_050 0.1256957876 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
16 Hb_034299_050 0.1257141884 - - hypothetical protein CICLE_v10031248mg [Citrus clementina]
17 Hb_006569_100 0.1257996714 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
18 Hb_002918_290 0.1271034715 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
19 Hb_002830_020 0.1276817495 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_000699_160 0.1278530134 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001454_120 Hb_001454_120 Hb_143496_010 Hb_143496_010 Hb_001454_120--Hb_143496_010 Hb_150196_010 Hb_150196_010 Hb_001454_120--Hb_150196_010 Hb_032803_010 Hb_032803_010 Hb_001454_120--Hb_032803_010 Hb_027073_050 Hb_027073_050 Hb_001454_120--Hb_027073_050 Hb_005645_010 Hb_005645_010 Hb_001454_120--Hb_005645_010 Hb_007317_160 Hb_007317_160 Hb_001454_120--Hb_007317_160 Hb_010175_040 Hb_010175_040 Hb_143496_010--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_143496_010--Hb_003226_100 Hb_017491_060 Hb_017491_060 Hb_143496_010--Hb_017491_060 Hb_001141_140 Hb_001141_140 Hb_143496_010--Hb_001141_140 Hb_003018_020 Hb_003018_020 Hb_143496_010--Hb_003018_020 Hb_000699_160 Hb_000699_160 Hb_143496_010--Hb_000699_160 Hb_008772_010 Hb_008772_010 Hb_150196_010--Hb_008772_010 Hb_005496_010 Hb_005496_010 Hb_150196_010--Hb_005496_010 Hb_004157_040 Hb_004157_040 Hb_150196_010--Hb_004157_040 Hb_000696_290 Hb_000696_290 Hb_150196_010--Hb_000696_290 Hb_000115_230 Hb_000115_230 Hb_150196_010--Hb_000115_230 Hb_032803_010--Hb_027073_050 Hb_000963_180 Hb_000963_180 Hb_032803_010--Hb_000963_180 Hb_000069_550 Hb_000069_550 Hb_032803_010--Hb_000069_550 Hb_000431_010 Hb_000431_010 Hb_032803_010--Hb_000431_010 Hb_006569_100 Hb_006569_100 Hb_032803_010--Hb_006569_100 Hb_007594_120 Hb_007594_120 Hb_032803_010--Hb_007594_120 Hb_001461_010 Hb_001461_010 Hb_027073_050--Hb_001461_010 Hb_027073_050--Hb_006569_100 Hb_002918_290 Hb_002918_290 Hb_027073_050--Hb_002918_290 Hb_001904_090 Hb_001904_090 Hb_027073_050--Hb_001904_090 Hb_001191_090 Hb_001191_090 Hb_027073_050--Hb_001191_090 Hb_017413_010 Hb_017413_010 Hb_027073_050--Hb_017413_010 Hb_004126_070 Hb_004126_070 Hb_005645_010--Hb_004126_070 Hb_005463_030 Hb_005463_030 Hb_005645_010--Hb_005463_030 Hb_001269_630 Hb_001269_630 Hb_005645_010--Hb_001269_630 Hb_000841_020 Hb_000841_020 Hb_005645_010--Hb_000841_020 Hb_034299_050 Hb_034299_050 Hb_005645_010--Hb_034299_050 Hb_006452_040 Hb_006452_040 Hb_007317_160--Hb_006452_040 Hb_001155_040 Hb_001155_040 Hb_007317_160--Hb_001155_040 Hb_005463_140 Hb_005463_140 Hb_007317_160--Hb_005463_140 Hb_012539_020 Hb_012539_020 Hb_007317_160--Hb_012539_020 Hb_000012_100 Hb_000012_100 Hb_007317_160--Hb_000012_100 Hb_005663_120 Hb_005663_120 Hb_007317_160--Hb_005663_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0107 0.568067 1.26195 2.11541 2.59327 0.94966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.75193 5.25127 3.48919 1.0268 0.876271

CAGE analysis