Hb_005463_030

Information

Type -
Description -
Location Contig5463: 12933-22409
Sequence    

Annotation

kegg
ID cam:101501329
description uncharacterized LOC101501329
nr
ID XP_012070296.1
description PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L505
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02605 PE=4 SV=1
Gene Ontology
ID GO:0005886
description PREDICTED: uncharacterized protein LOC105632512 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47995: 12787-15745 , PASA_asmbl_47997: 18223-19554 , PASA_asmbl_47998: 20095-20787 , PASA_asmbl_47999: 21113-21649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005463_030 0.0 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
2 Hb_000175_060 0.1020198104 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
3 Hb_001998_050 0.1028202169 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
4 Hb_001442_020 0.1032898121 - - unknown [Populus trichocarpa]
5 Hb_007943_090 0.1034207367 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
6 Hb_000227_230 0.1064835168 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
7 Hb_005645_010 0.1079271383 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
8 Hb_003018_200 0.1081308274 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
9 Hb_000009_160 0.1083537372 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
10 Hb_001863_390 0.1087606953 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
11 Hb_001269_630 0.1098027916 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
12 Hb_000258_170 0.110874625 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
13 Hb_000022_230 0.1110979658 - - hypothetical protein RCOM_0803470 [Ricinus communis]
14 Hb_000696_040 0.1112637364 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_016065_010 0.1114586761 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
16 Hb_004586_320 0.1126886013 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
17 Hb_034406_020 0.1137820645 - - PREDICTED: jmjC domain-containing protein 7 [Jatropha curcas]
18 Hb_018790_060 0.1142514928 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
19 Hb_001699_130 0.1148030238 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
20 Hb_005333_130 0.1158504644 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005463_030 Hb_005463_030 Hb_000175_060 Hb_000175_060 Hb_005463_030--Hb_000175_060 Hb_001998_050 Hb_001998_050 Hb_005463_030--Hb_001998_050 Hb_001442_020 Hb_001442_020 Hb_005463_030--Hb_001442_020 Hb_007943_090 Hb_007943_090 Hb_005463_030--Hb_007943_090 Hb_000227_230 Hb_000227_230 Hb_005463_030--Hb_000227_230 Hb_005645_010 Hb_005645_010 Hb_005463_030--Hb_005645_010 Hb_011173_050 Hb_011173_050 Hb_000175_060--Hb_011173_050 Hb_000215_060 Hb_000215_060 Hb_000175_060--Hb_000215_060 Hb_000086_280 Hb_000086_280 Hb_000175_060--Hb_000086_280 Hb_004586_320 Hb_004586_320 Hb_000175_060--Hb_004586_320 Hb_005568_120 Hb_005568_120 Hb_000175_060--Hb_005568_120 Hb_005883_100 Hb_005883_100 Hb_000175_060--Hb_005883_100 Hb_001998_050--Hb_000227_230 Hb_000574_480 Hb_000574_480 Hb_001998_050--Hb_000574_480 Hb_002925_030 Hb_002925_030 Hb_001998_050--Hb_002925_030 Hb_012753_160 Hb_012753_160 Hb_001998_050--Hb_012753_160 Hb_001998_050--Hb_004586_320 Hb_012675_060 Hb_012675_060 Hb_001998_050--Hb_012675_060 Hb_002110_120 Hb_002110_120 Hb_001442_020--Hb_002110_120 Hb_000200_100 Hb_000200_100 Hb_001442_020--Hb_000200_100 Hb_001269_630 Hb_001269_630 Hb_001442_020--Hb_001269_630 Hb_007101_150 Hb_007101_150 Hb_001442_020--Hb_007101_150 Hb_008173_090 Hb_008173_090 Hb_001442_020--Hb_008173_090 Hb_000522_080 Hb_000522_080 Hb_001442_020--Hb_000522_080 Hb_000009_160 Hb_000009_160 Hb_007943_090--Hb_000009_160 Hb_000146_020 Hb_000146_020 Hb_007943_090--Hb_000146_020 Hb_008289_060 Hb_008289_060 Hb_007943_090--Hb_008289_060 Hb_007943_090--Hb_004586_320 Hb_007943_090--Hb_001998_050 Hb_003376_030 Hb_003376_030 Hb_007943_090--Hb_003376_030 Hb_000227_230--Hb_002925_030 Hb_089839_020 Hb_089839_020 Hb_000227_230--Hb_089839_020 Hb_003398_120 Hb_003398_120 Hb_000227_230--Hb_003398_120 Hb_001505_020 Hb_001505_020 Hb_000227_230--Hb_001505_020 Hb_000380_190 Hb_000380_190 Hb_000227_230--Hb_000380_190 Hb_004126_070 Hb_004126_070 Hb_005645_010--Hb_004126_070 Hb_001454_120 Hb_001454_120 Hb_005645_010--Hb_001454_120 Hb_005645_010--Hb_001269_630 Hb_000841_020 Hb_000841_020 Hb_005645_010--Hb_000841_020 Hb_034299_050 Hb_034299_050 Hb_005645_010--Hb_034299_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2719 9.6521 5.77487 7.23421 21.8819 12.5801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0024 38.0705 29.0969 14.2755 3.95396

CAGE analysis