Hb_001442_020

Information

Type -
Description -
Location Contig1442: 48692-52927
Sequence    

Annotation

kegg
ID pop:POPTR_0018s08510g
description POPTRDRAFT_835769; 40S ribosomal protein S3
nr
ID ABK95963.1
description unknown [Populus trichocarpa]
swissprot
ID Q9FJA6
description 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1
trembl
ID A9PHW0
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s3-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11648: 48685-52961
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001442_020 0.0 - - unknown [Populus trichocarpa]
2 Hb_002110_120 0.0863094332 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
3 Hb_000200_100 0.0911487809 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
4 Hb_001269_630 0.0944336413 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
5 Hb_007101_150 0.0956117133 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
6 Hb_008173_090 0.0961277127 - - glutathione peroxidase, putative [Ricinus communis]
7 Hb_000522_080 0.0980415461 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
8 Hb_002311_350 0.0981984612 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
9 Hb_007317_150 0.0983660388 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
10 Hb_001257_080 0.1000970426 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000326_010 0.101405811 - - hypothetical protein POPTR_0009s11870g [Populus trichocarpa]
12 Hb_005463_030 0.1032898121 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
13 Hb_000007_100 0.1033584695 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
14 Hb_003018_200 0.1039605221 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
15 Hb_001818_020 0.1050911109 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
16 Hb_089140_100 0.1056400193 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
17 Hb_022216_020 0.1067318743 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
18 Hb_000189_270 0.1076533747 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
19 Hb_001235_190 0.1082127062 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
20 Hb_018790_060 0.1083733112 - - hypothetical protein JCGZ_21628 [Jatropha curcas]

Gene co-expression network

sample Hb_001442_020 Hb_001442_020 Hb_002110_120 Hb_002110_120 Hb_001442_020--Hb_002110_120 Hb_000200_100 Hb_000200_100 Hb_001442_020--Hb_000200_100 Hb_001269_630 Hb_001269_630 Hb_001442_020--Hb_001269_630 Hb_007101_150 Hb_007101_150 Hb_001442_020--Hb_007101_150 Hb_008173_090 Hb_008173_090 Hb_001442_020--Hb_008173_090 Hb_000522_080 Hb_000522_080 Hb_001442_020--Hb_000522_080 Hb_007317_150 Hb_007317_150 Hb_002110_120--Hb_007317_150 Hb_002110_120--Hb_001269_630 Hb_000020_060 Hb_000020_060 Hb_002110_120--Hb_000020_060 Hb_001235_190 Hb_001235_190 Hb_002110_120--Hb_001235_190 Hb_003656_070 Hb_003656_070 Hb_002110_120--Hb_003656_070 Hb_002110_120--Hb_008173_090 Hb_000200_100--Hb_008173_090 Hb_002301_140 Hb_002301_140 Hb_000200_100--Hb_002301_140 Hb_000200_100--Hb_001235_190 Hb_001257_080 Hb_001257_080 Hb_000200_100--Hb_001257_080 Hb_000970_010 Hb_000970_010 Hb_000200_100--Hb_000970_010 Hb_002182_060 Hb_002182_060 Hb_000200_100--Hb_002182_060 Hb_001832_060 Hb_001832_060 Hb_001269_630--Hb_001832_060 Hb_001269_630--Hb_007317_150 Hb_001269_630--Hb_003656_070 Hb_001269_630--Hb_000020_060 Hb_002686_020 Hb_002686_020 Hb_001269_630--Hb_002686_020 Hb_001828_090 Hb_001828_090 Hb_007101_150--Hb_001828_090 Hb_000056_340 Hb_000056_340 Hb_007101_150--Hb_000056_340 Hb_001512_070 Hb_001512_070 Hb_007101_150--Hb_001512_070 Hb_007101_150--Hb_001257_080 Hb_003018_200 Hb_003018_200 Hb_007101_150--Hb_003018_200 Hb_007741_050 Hb_007741_050 Hb_007101_150--Hb_007741_050 Hb_008173_090--Hb_001235_190 Hb_008173_090--Hb_003656_070 Hb_000574_480 Hb_000574_480 Hb_008173_090--Hb_000574_480 Hb_008173_090--Hb_000970_010 Hb_008173_090--Hb_002182_060 Hb_004242_080 Hb_004242_080 Hb_000522_080--Hb_004242_080 Hb_001722_100 Hb_001722_100 Hb_000522_080--Hb_001722_100 Hb_021650_030 Hb_021650_030 Hb_000522_080--Hb_021650_030 Hb_014720_080 Hb_014720_080 Hb_000522_080--Hb_014720_080 Hb_000091_090 Hb_000091_090 Hb_000522_080--Hb_000091_090 Hb_004223_280 Hb_004223_280 Hb_000522_080--Hb_004223_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.6708 41.1525 21.9658 31.2325 82.6345 55.1127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.5813 141.851 74.697 41.8757 6.98143

CAGE analysis