Hb_005496_010

Information

Type -
Description -
Location Contig5496: 25159-27941
Sequence    

Annotation

kegg
ID rcu:RCOM_0560200
description Protein SYM1, putative
nr
ID XP_012068244.1
description PREDICTED: PXMP2/4 family protein 4 [Jatropha curcas]
swissprot
ID Q4IPX8
description Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SYM1 PE=3 SV=1
trembl
ID A0A067L343
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16045 PE=4 SV=1
Gene Ontology
ID GO:0016021
description pxmp2 4 family protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48197: 26459-27936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_010 0.0 - - PREDICTED: PXMP2/4 family protein 4 [Jatropha curcas]
2 Hb_000330_070 0.0883603072 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
3 Hb_150196_010 0.0947106973 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
4 Hb_000175_060 0.0965098848 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
5 Hb_000239_030 0.1028852311 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
6 Hb_008772_010 0.1055470778 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000453_120 0.1062296853 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
8 Hb_001085_120 0.1066522874 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
9 Hb_000115_230 0.1078373496 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
10 Hb_004375_140 0.108451431 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
11 Hb_003326_020 0.1085984556 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
12 Hb_002811_080 0.1094646621 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
13 Hb_000567_410 0.1110873932 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
14 Hb_005063_050 0.1114735211 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
15 Hb_011628_040 0.1122037193 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
16 Hb_002217_450 0.1124211662 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
17 Hb_000392_380 0.1144216895 - - ubiquitin-conjugating enzyme [Medicago truncatula]
18 Hb_005511_160 0.1145025302 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
19 Hb_000086_280 0.114984876 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
20 Hb_000975_320 0.1154985183 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005496_010 Hb_005496_010 Hb_000330_070 Hb_000330_070 Hb_005496_010--Hb_000330_070 Hb_150196_010 Hb_150196_010 Hb_005496_010--Hb_150196_010 Hb_000175_060 Hb_000175_060 Hb_005496_010--Hb_000175_060 Hb_000239_030 Hb_000239_030 Hb_005496_010--Hb_000239_030 Hb_008772_010 Hb_008772_010 Hb_005496_010--Hb_008772_010 Hb_000453_120 Hb_000453_120 Hb_005496_010--Hb_000453_120 Hb_002811_080 Hb_002811_080 Hb_000330_070--Hb_002811_080 Hb_000567_410 Hb_000567_410 Hb_000330_070--Hb_000567_410 Hb_003326_020 Hb_003326_020 Hb_000330_070--Hb_003326_020 Hb_000645_140 Hb_000645_140 Hb_000330_070--Hb_000645_140 Hb_001235_110 Hb_001235_110 Hb_000330_070--Hb_001235_110 Hb_150196_010--Hb_008772_010 Hb_001454_120 Hb_001454_120 Hb_150196_010--Hb_001454_120 Hb_004157_040 Hb_004157_040 Hb_150196_010--Hb_004157_040 Hb_000696_290 Hb_000696_290 Hb_150196_010--Hb_000696_290 Hb_000115_230 Hb_000115_230 Hb_150196_010--Hb_000115_230 Hb_011173_050 Hb_011173_050 Hb_000175_060--Hb_011173_050 Hb_000215_060 Hb_000215_060 Hb_000175_060--Hb_000215_060 Hb_000086_280 Hb_000086_280 Hb_000175_060--Hb_000086_280 Hb_004586_320 Hb_004586_320 Hb_000175_060--Hb_004586_320 Hb_005568_120 Hb_005568_120 Hb_000175_060--Hb_005568_120 Hb_005883_100 Hb_005883_100 Hb_000175_060--Hb_005883_100 Hb_000239_030--Hb_000115_230 Hb_001157_010 Hb_001157_010 Hb_000239_030--Hb_001157_010 Hb_000239_030--Hb_003326_020 Hb_000915_120 Hb_000915_120 Hb_000239_030--Hb_000915_120 Hb_000236_150 Hb_000236_150 Hb_000239_030--Hb_000236_150 Hb_002217_450 Hb_002217_450 Hb_000239_030--Hb_002217_450 Hb_006478_160 Hb_006478_160 Hb_008772_010--Hb_006478_160 Hb_012760_070 Hb_012760_070 Hb_008772_010--Hb_012760_070 Hb_008772_010--Hb_000215_060 Hb_008772_010--Hb_000115_230 Hb_000450_130 Hb_000450_130 Hb_008772_010--Hb_000450_130 Hb_001484_070 Hb_001484_070 Hb_000453_120--Hb_001484_070 Hb_001085_120 Hb_001085_120 Hb_000453_120--Hb_001085_120 Hb_001512_080 Hb_001512_080 Hb_000453_120--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_000453_120--Hb_002110_200 Hb_000453_120--Hb_000086_280 Hb_003077_040 Hb_003077_040 Hb_000453_120--Hb_003077_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.66823 2.15432 3.43355 3.9396 4.61687 2.97201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.8417 17.1222 10.5836 3.76625 1.37005

CAGE analysis