Hb_001199_050

Information

Type -
Description -
Location Contig1199: 78594-81782
Sequence    

Annotation

kegg
ID rcu:RCOM_0278080
description DNA-3-methyladenine glycosylase, putative (EC:3.2.2.21)
nr
ID XP_012087791.1
description PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Jatropha curcas]
swissprot
ID Q39147
description DNA-3-methyladenine glycosylase OS=Arabidopsis thaliana GN=MAG PE=2 SV=1
trembl
ID A0A067JPA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25569 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna-3-methyladenine glycosylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05957: 78870-81613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001199_050 0.0 - - PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Jatropha curcas]
2 Hb_002163_020 0.0809196252 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
3 Hb_000679_010 0.0964138072 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
4 Hb_000120_960 0.1004103269 - - isocitrate dehydrogenase, putative [Ricinus communis]
5 Hb_002660_070 0.1010615797 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
6 Hb_000915_090 0.1029362294 - - PREDICTED: transcription initiation factor TFIID subunit 14b [Jatropha curcas]
7 Hb_000167_140 0.1031932184 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
8 Hb_010422_060 0.1045900042 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
9 Hb_007044_120 0.1057001566 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
10 Hb_129204_030 0.106198135 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
11 Hb_000368_010 0.1086626619 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 18 [Jatropha curcas]
12 Hb_000240_090 0.1102550892 - - Rab5 [Hevea brasiliensis]
13 Hb_000111_330 0.1107244158 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
14 Hb_034406_030 0.1115874659 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
15 Hb_029866_060 0.1127834009 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
16 Hb_004586_320 0.1132285826 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
17 Hb_002016_150 0.1142292496 - - PREDICTED: uncharacterized protein LOC105642512 [Jatropha curcas]
18 Hb_006647_020 0.1143502529 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
19 Hb_000406_120 0.1148218073 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
20 Hb_002995_020 0.1149005665 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001199_050 Hb_001199_050 Hb_002163_020 Hb_002163_020 Hb_001199_050--Hb_002163_020 Hb_000679_010 Hb_000679_010 Hb_001199_050--Hb_000679_010 Hb_000120_960 Hb_000120_960 Hb_001199_050--Hb_000120_960 Hb_002660_070 Hb_002660_070 Hb_001199_050--Hb_002660_070 Hb_000915_090 Hb_000915_090 Hb_001199_050--Hb_000915_090 Hb_000167_140 Hb_000167_140 Hb_001199_050--Hb_000167_140 Hb_011224_110 Hb_011224_110 Hb_002163_020--Hb_011224_110 Hb_029866_060 Hb_029866_060 Hb_002163_020--Hb_029866_060 Hb_002284_010 Hb_002284_010 Hb_002163_020--Hb_002284_010 Hb_002163_020--Hb_000915_090 Hb_005941_040 Hb_005941_040 Hb_002163_020--Hb_005941_040 Hb_000240_090 Hb_000240_090 Hb_002163_020--Hb_000240_090 Hb_032202_190 Hb_032202_190 Hb_000679_010--Hb_032202_190 Hb_003092_040 Hb_003092_040 Hb_000679_010--Hb_003092_040 Hb_025645_010 Hb_025645_010 Hb_000679_010--Hb_025645_010 Hb_001902_140 Hb_001902_140 Hb_000679_010--Hb_001902_140 Hb_008511_120 Hb_008511_120 Hb_000679_010--Hb_008511_120 Hb_006615_020 Hb_006615_020 Hb_000679_010--Hb_006615_020 Hb_000120_960--Hb_002660_070 Hb_010407_180 Hb_010407_180 Hb_000120_960--Hb_010407_180 Hb_000086_280 Hb_000086_280 Hb_000120_960--Hb_000086_280 Hb_003540_030 Hb_003540_030 Hb_000120_960--Hb_003540_030 Hb_020805_130 Hb_020805_130 Hb_000120_960--Hb_020805_130 Hb_007044_120 Hb_007044_120 Hb_000120_960--Hb_007044_120 Hb_008616_070 Hb_008616_070 Hb_002660_070--Hb_008616_070 Hb_001507_040 Hb_001507_040 Hb_002660_070--Hb_001507_040 Hb_002660_070--Hb_000086_280 Hb_065525_090 Hb_065525_090 Hb_002660_070--Hb_065525_090 Hb_002660_070--Hb_020805_130 Hb_004635_100 Hb_004635_100 Hb_000915_090--Hb_004635_100 Hb_008725_260 Hb_008725_260 Hb_000915_090--Hb_008725_260 Hb_010422_060 Hb_010422_060 Hb_000915_090--Hb_010422_060 Hb_000915_090--Hb_000240_090 Hb_004109_170 Hb_004109_170 Hb_000915_090--Hb_004109_170 Hb_129204_030 Hb_129204_030 Hb_000167_140--Hb_129204_030 Hb_008221_140 Hb_008221_140 Hb_000167_140--Hb_008221_140 Hb_000608_370 Hb_000608_370 Hb_000167_140--Hb_000608_370 Hb_000676_180 Hb_000676_180 Hb_000167_140--Hb_000676_180 Hb_008878_030 Hb_008878_030 Hb_000167_140--Hb_008878_030 Hb_001140_060 Hb_001140_060 Hb_000167_140--Hb_001140_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.83596 5.83067 5.29545 4.14586 6.00494 3.32318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0187 11.7549 14.6194 6.20869 2.33287

CAGE analysis