Hb_002644_030

Information

Type -
Description -
Location Contig2644: 54736-56675
Sequence    

Annotation

kegg
ID egr:104431336
description E3 ubiquitin-protein ligase UPL5-like
nr
ID XP_010042290.1
description PREDICTED: E3 ubiquitin-protein ligase UPL5-like, partial [Eucalyptus grandis]
swissprot
ID Q9SU29
description E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1
trembl
ID A0A059CF33
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01414 PE=4 SV=1
Gene Ontology
ID GO:0016740
description e3 ubiquitin-protein ligase upl5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002644_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like, partial [Eucalyptus grandis]
2 Hb_001506_010 0.267027416 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
3 Hb_000331_150 0.3092958081 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_000115_300 0.319129252 - - -
5 Hb_004881_100 0.3415541185 - - Phosphoribosyltransferase family protein isoform 4 [Theobroma cacao]
6 Hb_000504_080 0.3468533169 - - -
7 Hb_067188_010 0.3472180457 - - -
8 Hb_003581_190 0.3554228979 transcription factor TF Family: ERF hypothetical protein JCGZ_21694 [Jatropha curcas]
9 Hb_000038_030 0.3574046005 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
10 Hb_000060_120 0.3586949833 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
11 Hb_010317_020 0.3630409041 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
12 Hb_171065_010 0.3639394571 - - Ribonuclease H protein [Theobroma cacao]
13 Hb_000483_210 0.3675481629 - - hypothetical protein JCGZ_03497 [Jatropha curcas]
14 Hb_000567_160 0.3699232746 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]
15 Hb_000300_330 0.3713861984 - - -
16 Hb_003768_040 0.3715392988 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_003069_020 0.371629101 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012522_010 0.3749980189 - - hypothetical protein VITISV_003261 [Vitis vinifera]
19 Hb_000431_020 0.3778953892 - - hypothetical protein JCGZ_06801 [Jatropha curcas]
20 Hb_001837_020 0.3798282646 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X4 [Populus euphratica]

Gene co-expression network

sample Hb_002644_030 Hb_002644_030 Hb_001506_010 Hb_001506_010 Hb_002644_030--Hb_001506_010 Hb_000331_150 Hb_000331_150 Hb_002644_030--Hb_000331_150 Hb_000115_300 Hb_000115_300 Hb_002644_030--Hb_000115_300 Hb_004881_100 Hb_004881_100 Hb_002644_030--Hb_004881_100 Hb_000504_080 Hb_000504_080 Hb_002644_030--Hb_000504_080 Hb_067188_010 Hb_067188_010 Hb_002644_030--Hb_067188_010 Hb_000101_160 Hb_000101_160 Hb_001506_010--Hb_000101_160 Hb_010317_020 Hb_010317_020 Hb_001506_010--Hb_010317_020 Hb_001678_020 Hb_001678_020 Hb_001506_010--Hb_001678_020 Hb_000038_030 Hb_000038_030 Hb_001506_010--Hb_000038_030 Hb_024404_010 Hb_024404_010 Hb_001506_010--Hb_024404_010 Hb_024505_050 Hb_024505_050 Hb_001506_010--Hb_024505_050 Hb_000331_150--Hb_000038_030 Hb_000291_280 Hb_000291_280 Hb_000331_150--Hb_000291_280 Hb_003069_020 Hb_003069_020 Hb_000331_150--Hb_003069_020 Hb_000397_070 Hb_000397_070 Hb_000331_150--Hb_000397_070 Hb_011218_060 Hb_011218_060 Hb_000331_150--Hb_011218_060 Hb_000331_150--Hb_067188_010 Hb_000483_210 Hb_000483_210 Hb_000115_300--Hb_000483_210 Hb_003589_070 Hb_003589_070 Hb_000115_300--Hb_003589_070 Hb_002184_100 Hb_002184_100 Hb_000115_300--Hb_002184_100 Hb_000115_300--Hb_004881_100 Hb_178607_010 Hb_178607_010 Hb_000115_300--Hb_178607_010 Hb_000512_070 Hb_000512_070 Hb_004881_100--Hb_000512_070 Hb_001242_090 Hb_001242_090 Hb_004881_100--Hb_001242_090 Hb_004103_030 Hb_004103_030 Hb_004881_100--Hb_004103_030 Hb_177179_010 Hb_177179_010 Hb_004881_100--Hb_177179_010 Hb_002289_130 Hb_002289_130 Hb_004881_100--Hb_002289_130 Hb_004881_100--Hb_001506_010 Hb_097433_010 Hb_097433_010 Hb_000504_080--Hb_097433_010 Hb_003327_030 Hb_003327_030 Hb_000504_080--Hb_003327_030 Hb_012181_010 Hb_012181_010 Hb_000504_080--Hb_012181_010 Hb_002814_120 Hb_002814_120 Hb_000504_080--Hb_002814_120 Hb_004650_080 Hb_004650_080 Hb_000504_080--Hb_004650_080 Hb_000513_070 Hb_000513_070 Hb_000504_080--Hb_000513_070 Hb_067188_010--Hb_000038_030 Hb_004324_350 Hb_004324_350 Hb_067188_010--Hb_004324_350 Hb_099864_010 Hb_099864_010 Hb_067188_010--Hb_099864_010 Hb_004306_070 Hb_004306_070 Hb_067188_010--Hb_004306_070 Hb_022148_010 Hb_022148_010 Hb_067188_010--Hb_022148_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0275974 0 0.0514865 0 0.237749 0.0194417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.146378 0.079938 0

CAGE analysis