Hb_004306_070

Information

Type -
Description -
Location Contig4306: 29892-30095
Sequence    

Annotation

kegg
ID -
description -
nr
ID AEX12054.1
description hypothetical protein 0_18789_01, partial [Pinus taeda]
swissprot
ID -
description -
trembl
ID K7NJF9
description Uncharacterized protein (Fragment) OS=Pinus taeda GN=0_18789_01 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004306_070 0.0 - - hypothetical protein 0_18789_01, partial [Pinus taeda]
2 Hb_000270_320 0.1717094711 - - hypothetical protein RCOM_1512920 [Ricinus communis]
3 Hb_001238_050 0.1908729196 - - -
4 Hb_067188_010 0.2261609874 - - -
5 Hb_030736_010 0.2264402123 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000162_040 0.2351038008 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
7 Hb_004306_050 0.2378799735 - - unnamed protein product [Vitis vinifera]
8 Hb_001999_060 0.241046423 - - hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
9 Hb_010142_070 0.2434191981 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
10 Hb_005843_030 0.2457889872 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
11 Hb_008085_030 0.2481124431 - - PREDICTED: uncharacterized protein LOC105639414 [Jatropha curcas]
12 Hb_011909_040 0.2498703593 - - hypothetical protein JCGZ_00750 [Jatropha curcas]
13 Hb_001102_180 0.2500082163 - - eukaryotic translation initiation factor, putative [Ricinus communis]
14 Hb_001633_170 0.2512954364 - - PREDICTED: aspartokinase 2, chloroplastic-like isoform X1 [Jatropha curcas]
15 Hb_000510_140 0.2547969593 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
16 Hb_007760_030 0.2557658029 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
17 Hb_024973_010 0.2559416085 - - PREDICTED: uncharacterized protein LOC105642097 isoform X2 [Jatropha curcas]
18 Hb_007152_020 0.2560231957 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
19 Hb_000062_350 0.2568143639 - - amino acid transporter, putative [Ricinus communis]
20 Hb_000297_050 0.2585195531 - - hypothetical protein JCGZ_08840 [Jatropha curcas]

Gene co-expression network

sample Hb_004306_070 Hb_004306_070 Hb_000270_320 Hb_000270_320 Hb_004306_070--Hb_000270_320 Hb_001238_050 Hb_001238_050 Hb_004306_070--Hb_001238_050 Hb_067188_010 Hb_067188_010 Hb_004306_070--Hb_067188_010 Hb_030736_010 Hb_030736_010 Hb_004306_070--Hb_030736_010 Hb_000162_040 Hb_000162_040 Hb_004306_070--Hb_000162_040 Hb_004306_050 Hb_004306_050 Hb_004306_070--Hb_004306_050 Hb_001488_100 Hb_001488_100 Hb_000270_320--Hb_001488_100 Hb_000340_430 Hb_000340_430 Hb_000270_320--Hb_000340_430 Hb_000329_600 Hb_000329_600 Hb_000270_320--Hb_000329_600 Hb_001999_060 Hb_001999_060 Hb_000270_320--Hb_001999_060 Hb_002301_320 Hb_002301_320 Hb_000270_320--Hb_002301_320 Hb_011909_040 Hb_011909_040 Hb_000270_320--Hb_011909_040 Hb_000424_250 Hb_000424_250 Hb_001238_050--Hb_000424_250 Hb_001238_050--Hb_000162_040 Hb_034482_020 Hb_034482_020 Hb_001238_050--Hb_034482_020 Hb_000326_040 Hb_000326_040 Hb_001238_050--Hb_000326_040 Hb_000816_130 Hb_000816_130 Hb_001238_050--Hb_000816_130 Hb_000038_030 Hb_000038_030 Hb_067188_010--Hb_000038_030 Hb_004324_350 Hb_004324_350 Hb_067188_010--Hb_004324_350 Hb_099864_010 Hb_099864_010 Hb_067188_010--Hb_099864_010 Hb_000331_150 Hb_000331_150 Hb_067188_010--Hb_000331_150 Hb_022148_010 Hb_022148_010 Hb_067188_010--Hb_022148_010 Hb_001004_040 Hb_001004_040 Hb_030736_010--Hb_001004_040 Hb_127003_010 Hb_127003_010 Hb_030736_010--Hb_127003_010 Hb_001140_200 Hb_001140_200 Hb_030736_010--Hb_001140_200 Hb_182424_010 Hb_182424_010 Hb_030736_010--Hb_182424_010 Hb_030736_010--Hb_011909_040 Hb_001946_280 Hb_001946_280 Hb_030736_010--Hb_001946_280 Hb_027402_070 Hb_027402_070 Hb_000162_040--Hb_027402_070 Hb_004306_060 Hb_004306_060 Hb_000162_040--Hb_004306_060 Hb_023292_010 Hb_023292_010 Hb_000162_040--Hb_023292_010 Hb_004128_180 Hb_004128_180 Hb_000162_040--Hb_004128_180 Hb_064997_010 Hb_064997_010 Hb_000162_040--Hb_064997_010 Hb_001633_170 Hb_001633_170 Hb_000162_040--Hb_001633_170 Hb_000487_330 Hb_000487_330 Hb_004306_050--Hb_000487_330 Hb_033594_130 Hb_033594_130 Hb_004306_050--Hb_033594_130 Hb_004306_050--Hb_000270_320 Hb_001842_070 Hb_001842_070 Hb_004306_050--Hb_001842_070 Hb_006472_010 Hb_006472_010 Hb_004306_050--Hb_006472_010 Hb_020247_040 Hb_020247_040 Hb_004306_050--Hb_020247_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.619 0 5.24856 0 5.32858 8.34942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.01622 5.40819 11.8585 2.51255 0

CAGE analysis