Hb_001999_060

Information

Type -
Description -
Location Contig1999: 108033-110422
Sequence    

Annotation

kegg
ID tcc:TCM_041631
description RING/U-box superfamily protein isoform 1
nr
ID XP_006379045.1
description hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G5X7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s05000g PE=4 SV=1
Gene Ontology
ID GO:0005829
description ring u-box superfamily protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_060 0.0 - - hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
2 Hb_002357_040 0.0987747818 - - latex-abundant protein [Hevea brasiliensis]
3 Hb_002038_060 0.1038232988 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
4 Hb_003638_030 0.1144422837 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
5 Hb_026048_100 0.1175644345 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
6 Hb_000025_480 0.1230440914 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
7 Hb_103873_010 0.1231448418 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
8 Hb_003497_030 0.124926591 - - ADP-ribosylation factor, putative [Ricinus communis]
9 Hb_007760_030 0.1261595975 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
10 Hb_004735_010 0.1264314165 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
11 Hb_001902_050 0.1290394691 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
12 Hb_000700_090 0.1297436799 - - protein with unknown function [Ricinus communis]
13 Hb_006602_020 0.1319768881 - - unknown [Medicago truncatula]
14 Hb_000856_340 0.1330273691 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
15 Hb_001476_100 0.1358726527 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005779_100 0.1380939103 - - DNAJ [Theobroma cacao]
17 Hb_002025_320 0.1383110363 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
18 Hb_001842_070 0.1385589271 - - PREDICTED: uncharacterized protein LOC105637106 [Jatropha curcas]
19 Hb_000805_090 0.1400757223 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
20 Hb_000122_130 0.1404068636 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001999_060 Hb_001999_060 Hb_002357_040 Hb_002357_040 Hb_001999_060--Hb_002357_040 Hb_002038_060 Hb_002038_060 Hb_001999_060--Hb_002038_060 Hb_003638_030 Hb_003638_030 Hb_001999_060--Hb_003638_030 Hb_026048_100 Hb_026048_100 Hb_001999_060--Hb_026048_100 Hb_000025_480 Hb_000025_480 Hb_001999_060--Hb_000025_480 Hb_103873_010 Hb_103873_010 Hb_001999_060--Hb_103873_010 Hb_002357_040--Hb_000025_480 Hb_001981_090 Hb_001981_090 Hb_002357_040--Hb_001981_090 Hb_001366_220 Hb_001366_220 Hb_002357_040--Hb_001366_220 Hb_000805_090 Hb_000805_090 Hb_002357_040--Hb_000805_090 Hb_000696_110 Hb_000696_110 Hb_002357_040--Hb_000696_110 Hb_000387_080 Hb_000387_080 Hb_002357_040--Hb_000387_080 Hb_002038_060--Hb_103873_010 Hb_003001_030 Hb_003001_030 Hb_002038_060--Hb_003001_030 Hb_004126_010 Hb_004126_010 Hb_002038_060--Hb_004126_010 Hb_014067_010 Hb_014067_010 Hb_002038_060--Hb_014067_010 Hb_009510_030 Hb_009510_030 Hb_002038_060--Hb_009510_030 Hb_002207_100 Hb_002207_100 Hb_003638_030--Hb_002207_100 Hb_003638_030--Hb_000805_090 Hb_003638_030--Hb_026048_100 Hb_000172_400 Hb_000172_400 Hb_003638_030--Hb_000172_400 Hb_162275_010 Hb_162275_010 Hb_003638_030--Hb_162275_010 Hb_000700_090 Hb_000700_090 Hb_003638_030--Hb_000700_090 Hb_066807_010 Hb_066807_010 Hb_026048_100--Hb_066807_010 Hb_006602_020 Hb_006602_020 Hb_026048_100--Hb_006602_020 Hb_026048_100--Hb_000700_090 Hb_000057_060 Hb_000057_060 Hb_026048_100--Hb_000057_060 Hb_026048_100--Hb_000172_400 Hb_007760_030 Hb_007760_030 Hb_000025_480--Hb_007760_030 Hb_098993_010 Hb_098993_010 Hb_000025_480--Hb_098993_010 Hb_011174_070 Hb_011174_070 Hb_000025_480--Hb_011174_070 Hb_000538_210 Hb_000538_210 Hb_000025_480--Hb_000538_210 Hb_000110_160 Hb_000110_160 Hb_000025_480--Hb_000110_160 Hb_002248_050 Hb_002248_050 Hb_103873_010--Hb_002248_050 Hb_002301_320 Hb_002301_320 Hb_103873_010--Hb_002301_320 Hb_103873_010--Hb_014067_010 Hb_103873_010--Hb_026048_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.2041 0.46315 0.503867 0.546948 5.07637 8.51638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.51578 5.11268 7.58985 2.33959 0.135605

CAGE analysis