Hb_002038_060

Information

Type -
Description -
Location Contig2038: 113693-136667
Sequence    

Annotation

kegg
ID vvi:100265010
description uncharacterized LOC100265010
nr
ID XP_010654798.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
swissprot
ID Q8BV79
description TPR and ankyrin repeat-containing protein 1 OS=Mus musculus GN=Trank1 PE=2 SV=3
trembl
ID F6HG17
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g01830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20873: 115176-117385 , PASA_asmbl_20874: 117525-117657 , PASA_asmbl_20876: 118549-118824 , PASA_asmbl_20877: 118994-119713 , PASA_asmbl_20878: 121800-122470 , PASA_asmbl_20880: 125625-125812
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002038_060 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
2 Hb_103873_010 0.0870447556 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
3 Hb_003001_030 0.100161391 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
4 Hb_004126_010 0.10111398 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
5 Hb_014067_010 0.1028068241 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
6 Hb_009510_030 0.1037374843 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
7 Hb_001999_060 0.1038232988 - - hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
8 Hb_032531_030 0.1067594513 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_000057_060 0.1108024096 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
10 Hb_026048_100 0.1120970067 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
11 Hb_002200_110 0.1154681947 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000700_090 0.1155813266 - - protein with unknown function [Ricinus communis]
13 Hb_114684_020 0.1172416666 - - beta-1,3-glucanase [Hevea brasiliensis]
14 Hb_000249_110 0.1193355424 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
15 Hb_002301_320 0.1207492561 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
16 Hb_026048_090 0.1226432396 - - conserved hypothetical protein [Ricinus communis]
17 Hb_066807_010 0.1229665793 - - PREDICTED: uncharacterized protein LOC105628412 [Jatropha curcas]
18 Hb_006602_020 0.1237644915 - - unknown [Medicago truncatula]
19 Hb_005488_070 0.1242584078 - - putative cytochrome P450 [Oryza sativa Japonica Group]
20 Hb_005063_010 0.1245171393 - - HEV1.1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002038_060 Hb_002038_060 Hb_103873_010 Hb_103873_010 Hb_002038_060--Hb_103873_010 Hb_003001_030 Hb_003001_030 Hb_002038_060--Hb_003001_030 Hb_004126_010 Hb_004126_010 Hb_002038_060--Hb_004126_010 Hb_014067_010 Hb_014067_010 Hb_002038_060--Hb_014067_010 Hb_009510_030 Hb_009510_030 Hb_002038_060--Hb_009510_030 Hb_001999_060 Hb_001999_060 Hb_002038_060--Hb_001999_060 Hb_002248_050 Hb_002248_050 Hb_103873_010--Hb_002248_050 Hb_002301_320 Hb_002301_320 Hb_103873_010--Hb_002301_320 Hb_103873_010--Hb_014067_010 Hb_103873_010--Hb_001999_060 Hb_026048_100 Hb_026048_100 Hb_103873_010--Hb_026048_100 Hb_003001_030--Hb_009510_030 Hb_114684_020 Hb_114684_020 Hb_003001_030--Hb_114684_020 Hb_005730_020 Hb_005730_020 Hb_003001_030--Hb_005730_020 Hb_002609_260 Hb_002609_260 Hb_003001_030--Hb_002609_260 Hb_003001_030--Hb_004126_010 Hb_000249_110 Hb_000249_110 Hb_003001_030--Hb_000249_110 Hb_004126_010--Hb_009510_030 Hb_004126_010--Hb_014067_010 Hb_026048_090 Hb_026048_090 Hb_004126_010--Hb_026048_090 Hb_000057_060 Hb_000057_060 Hb_004126_010--Hb_000057_060 Hb_002506_010 Hb_002506_010 Hb_004126_010--Hb_002506_010 Hb_014067_010--Hb_000249_110 Hb_138413_010 Hb_138413_010 Hb_014067_010--Hb_138413_010 Hb_002843_160 Hb_002843_160 Hb_014067_010--Hb_002843_160 Hb_014067_010--Hb_005730_020 Hb_014067_010--Hb_009510_030 Hb_009510_030--Hb_002506_010 Hb_009510_030--Hb_026048_090 Hb_000771_140 Hb_000771_140 Hb_009510_030--Hb_000771_140 Hb_009510_030--Hb_000057_060 Hb_002357_040 Hb_002357_040 Hb_001999_060--Hb_002357_040 Hb_003638_030 Hb_003638_030 Hb_001999_060--Hb_003638_030 Hb_001999_060--Hb_026048_100 Hb_000025_480 Hb_000025_480 Hb_001999_060--Hb_000025_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.8195 5.3913 0.804622 3.70019 84.1909 121.368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.6746 57.4484 84.2743 17.5593 3.17516

CAGE analysis