Hb_000162_040

Information

Type -
Description -
Location Contig162: 74115-76368
Sequence    

Annotation

kegg
ID rcu:RCOM_0739730
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012092576.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
swissprot
ID Q9SKQ4
description Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
trembl
ID B9SQL4
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0739730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
2 Hb_027402_070 0.1193830336 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
3 Hb_004306_060 0.1217610006 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
4 Hb_023292_010 0.1262633894 - - Cucumisin precursor, putative [Ricinus communis]
5 Hb_004128_180 0.1270567376 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_064997_010 0.1292092351 - - hypothetical protein JCGZ_19852 [Jatropha curcas]
7 Hb_001633_170 0.1302085027 - - PREDICTED: aspartokinase 2, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_001141_280 0.1346291597 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
9 Hb_010142_070 0.1346416545 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
10 Hb_000377_060 0.1351533476 - - ARF GTPase activator, putative [Ricinus communis]
11 Hb_000080_190 0.1352602398 - - -
12 Hb_003018_190 0.1358872953 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
13 Hb_003408_030 0.1369275362 - - PREDICTED: protein YIF1B [Jatropha curcas]
14 Hb_006935_050 0.1385283807 - - PREDICTED: probable glutathione peroxidase 2 [Populus euphratica]
15 Hb_001439_190 0.1392514594 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
16 Hb_004738_040 0.1399691714 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
17 Hb_002498_060 0.1400547249 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000753_130 0.1405541884 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
19 Hb_000479_130 0.1410280704 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
20 Hb_005625_020 0.1410974121 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000162_040 Hb_000162_040 Hb_027402_070 Hb_027402_070 Hb_000162_040--Hb_027402_070 Hb_004306_060 Hb_004306_060 Hb_000162_040--Hb_004306_060 Hb_023292_010 Hb_023292_010 Hb_000162_040--Hb_023292_010 Hb_004128_180 Hb_004128_180 Hb_000162_040--Hb_004128_180 Hb_064997_010 Hb_064997_010 Hb_000162_040--Hb_064997_010 Hb_001633_170 Hb_001633_170 Hb_000162_040--Hb_001633_170 Hb_000753_130 Hb_000753_130 Hb_027402_070--Hb_000753_130 Hb_000377_060 Hb_000377_060 Hb_027402_070--Hb_000377_060 Hb_001141_280 Hb_001141_280 Hb_027402_070--Hb_001141_280 Hb_000976_360 Hb_000976_360 Hb_027402_070--Hb_000976_360 Hb_029866_040 Hb_029866_040 Hb_027402_070--Hb_029866_040 Hb_000975_300 Hb_000975_300 Hb_027402_070--Hb_000975_300 Hb_000479_130 Hb_000479_130 Hb_004306_060--Hb_000479_130 Hb_000934_270 Hb_000934_270 Hb_004306_060--Hb_000934_270 Hb_000236_140 Hb_000236_140 Hb_004306_060--Hb_000236_140 Hb_002498_060 Hb_002498_060 Hb_004306_060--Hb_002498_060 Hb_000059_220 Hb_000059_220 Hb_004306_060--Hb_000059_220 Hb_000193_250 Hb_000193_250 Hb_004306_060--Hb_000193_250 Hb_001073_050 Hb_001073_050 Hb_023292_010--Hb_001073_050 Hb_001357_080 Hb_001357_080 Hb_023292_010--Hb_001357_080 Hb_003018_190 Hb_003018_190 Hb_023292_010--Hb_003018_190 Hb_002603_160 Hb_002603_160 Hb_023292_010--Hb_002603_160 Hb_006935_050 Hb_006935_050 Hb_023292_010--Hb_006935_050 Hb_100804_010 Hb_100804_010 Hb_023292_010--Hb_100804_010 Hb_004128_180--Hb_000236_140 Hb_000997_400 Hb_000997_400 Hb_004128_180--Hb_000997_400 Hb_000019_060 Hb_000019_060 Hb_004128_180--Hb_000019_060 Hb_004128_180--Hb_000059_220 Hb_027472_170 Hb_027472_170 Hb_004128_180--Hb_027472_170 Hb_000297_200 Hb_000297_200 Hb_004128_180--Hb_000297_200 Hb_001153_220 Hb_001153_220 Hb_064997_010--Hb_001153_220 Hb_064997_010--Hb_003018_190 Hb_000836_070 Hb_000836_070 Hb_064997_010--Hb_000836_070 Hb_064997_010--Hb_000997_400 Hb_008311_010 Hb_008311_010 Hb_064997_010--Hb_008311_010 Hb_025214_130 Hb_025214_130 Hb_064997_010--Hb_025214_130 Hb_009666_040 Hb_009666_040 Hb_001633_170--Hb_009666_040 Hb_000627_120 Hb_000627_120 Hb_001633_170--Hb_000627_120 Hb_001633_170--Hb_008311_010 Hb_002527_070 Hb_002527_070 Hb_001633_170--Hb_002527_070 Hb_001633_170--Hb_001141_280 Hb_000205_270 Hb_000205_270 Hb_001633_170--Hb_000205_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.728665 0.177995 0.443228 0.304992 0.61146 1.09774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.577427 1.04212 2.30264 0.363023 0.167173

CAGE analysis